[SCHEMA] Consolidate schema files by term type (#883)

* Reorganize schema. * Fix formatting issues. * Start documenting new structure in README. Still need to document the rules files. * Fix every indent ever. * Fix MD spacing. * Update README.md * Update README.md * Document the rules files. * Clean up the datatypes rules files. * Get schemacode working with new structure. * It turns out the extra indents are not strictly YAML compliant. * "date" should be a format, not a pattern. See https://github.com/bids-standard/bids-specification/pull/885/files#r715815807. * Apply suggestions from code review The datatype descriptions. Co-authored-by: Chris Markiewicz <[email protected]> * Apply suggestions from code review Make utility functions public. Co-authored-by: Chris Markiewicz <[email protected]> * Apply suggestions from code review Thanks @Remi-Gau! Co-authored-by: Remi Gau <[email protected]> * Explain entity "types" a bit better. * Try fixing the markdown style issues. * Update README.md * Update README.md * Update README.md Co-authored-by: Chris Markiewicz <[email protected]> Co-authored-by: Remi Gau <[email protected]>
bids-standard · Oct 5, 2021 · 251f440 · 251f440
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diff --git a/.yamllint.yml b/.yamllint.yml
@@ -3,3 +3,6 @@ extends: default
 rules:
   line-length:
     max: 120
+  indentation:
+    # See https://github.com/yaml/pyyaml/issues/545 for why
+    indent-sequences: false
diff --git a/src/schema/README.md b/src/schema/README.md
diff --git a/src/schema/associated_data.yaml b/src/schema/associated_data.yaml
diff --git a/src/schema/metadata/Acknowledgements.yaml b/src/schema/metadata/Acknowledgements.yaml
diff --git a/src/schema/metadata/AcquisitionDuration.yaml b/src/schema/metadata/AcquisitionDuration.yaml
diff --git a/src/schema/metadata/AcquisitionMode.yaml b/src/schema/metadata/AcquisitionMode.yaml
diff --git a/src/schema/metadata/AcquisitionVoxelSize.yaml b/src/schema/metadata/AcquisitionVoxelSize.yaml
diff --git a/src/schema/metadata/Anaesthesia.yaml b/src/schema/metadata/Anaesthesia.yaml
diff --git a/src/schema/metadata/AnalyticalApproach.yaml b/src/schema/metadata/AnalyticalApproach.yaml
diff --git a/src/schema/metadata/AnatomicalLandmarkCoordinateSystem.yaml b/src/schema/metadata/AnatomicalLandmarkCoordinateSystem.yaml
diff --git a/src/schema/metadata/AnatomicalLandmarkCoordinateSystemDescription.yaml b/src/schema/metadata/AnatomicalLandmarkCoordinateSystemDescription.yaml
diff --git a/src/schema/metadata/AnatomicalLandmarkCoordinateUnits.yaml b/src/schema/metadata/AnatomicalLandmarkCoordinateUnits.yaml
diff --git a/src/schema/metadata/AnatomicalLandmarkCoordinates.yaml b/src/schema/metadata/AnatomicalLandmarkCoordinates.yaml
diff --git a/src/schema/metadata/AnatomicalLandmarkCoordinates_mri.yaml b/src/schema/metadata/AnatomicalLandmarkCoordinates_mri.yaml
diff --git a/src/schema/metadata/ArterialSpinLabelingType.yaml b/src/schema/metadata/ArterialSpinLabelingType.yaml
diff --git a/src/schema/metadata/AssociatedEmptyRoom.yaml b/src/schema/metadata/AssociatedEmptyRoom.yaml
diff --git a/src/schema/metadata/Atlas.yaml b/src/schema/metadata/Atlas.yaml
diff --git a/src/schema/metadata/AttenuationCorrection.yaml b/src/schema/metadata/AttenuationCorrection.yaml
diff --git a/src/schema/metadata/AttenuationCorrectionMethodReference.yaml b/src/schema/metadata/AttenuationCorrectionMethodReference.yaml
diff --git a/src/schema/metadata/Authors.yaml b/src/schema/metadata/Authors.yaml
diff --git a/src/schema/metadata/B0FieldIdentifier.yaml b/src/schema/metadata/B0FieldIdentifier.yaml
diff --git a/src/schema/metadata/B0FieldSource.yaml b/src/schema/metadata/B0FieldSource.yaml
diff --git a/src/schema/metadata/BIDSVersion.yaml b/src/schema/metadata/BIDSVersion.yaml
diff --git a/src/schema/metadata/BackgroundSuppression.yaml b/src/schema/metadata/BackgroundSuppression.yaml
diff --git a/src/schema/metadata/BackgroundSuppressionNumberPulses.yaml b/src/schema/metadata/BackgroundSuppressionNumberPulses.yaml
diff --git a/src/schema/metadata/BackgroundSuppressionPulseTime.yaml b/src/schema/metadata/BackgroundSuppressionPulseTime.yaml
diff --git a/src/schema/metadata/BasedOn.yaml b/src/schema/metadata/BasedOn.yaml
diff --git a/src/schema/metadata/BloodDensity.yaml b/src/schema/metadata/BloodDensity.yaml
diff --git a/src/schema/metadata/BodyPart.yaml b/src/schema/metadata/BodyPart.yaml
diff --git a/src/schema/metadata/BolusCutOffDelayTime.yaml b/src/schema/metadata/BolusCutOffDelayTime.yaml
diff --git a/src/schema/metadata/BolusCutOffFlag.yaml b/src/schema/metadata/BolusCutOffFlag.yaml
diff --git a/src/schema/metadata/BolusCutOffTechnique.yaml b/src/schema/metadata/BolusCutOffTechnique.yaml
diff --git a/src/schema/metadata/BrainLocation.yaml b/src/schema/metadata/BrainLocation.yaml
diff --git a/src/schema/metadata/CASLType.yaml b/src/schema/metadata/CASLType.yaml
diff --git a/src/schema/metadata/CapManufacturer.yaml b/src/schema/metadata/CapManufacturer.yaml
diff --git a/src/schema/metadata/CapManufacturersModelName.yaml b/src/schema/metadata/CapManufacturersModelName.yaml
diff --git a/src/schema/metadata/CellType.yaml b/src/schema/metadata/CellType.yaml
diff --git a/src/schema/metadata/Code.yaml b/src/schema/metadata/Code.yaml
diff --git a/src/schema/metadata/CogAtlasID.yaml b/src/schema/metadata/CogAtlasID.yaml