Adjust workflows to apply patches and pushed patched version as well …

…for introspection

.github/workflows/schemacode_ci.yml

@@ -66,6 +66,9 @@ jobs:
     steps:
       - uses: actions/checkout@v4
 
+      - name: "Apply patches for BIDS-2.0"
+        run: tools/bids-2.0/apply_all
+
       - name: "Set up Python"
         uses: actions/setup-python@v5
         with:

.github/workflows/validate_bids-examples.yml

@@ -33,6 +33,25 @@ jobs:
     steps:
     - uses: actions/checkout@v4
 
+    - name: "Apply patches for BIDS-2.0"
+      run: |
+        set -o pipefail
+        tools/bids-2.0/apply_all 2>&1 | tee /tmp/patch.log
+
+    - name: "Push patched version online for possible introspection"
+      # if: contains(github.ref, 'refs/heads/bids-2.0')
+      run: |
+        set -x
+        commit=$(git rev-parse HEAD)
+        branch=$(git rev-parse --abbrev-ref HEAD)-patched
+        git checkout -b "$branch"
+        git add .
+        {
+          echo -e "Applied patches for BIDS-2.0 to $commit\n";
+          cat /tmp/patch.log";
+        } | git commit -F -
+        git push -f origin "$branch"
+
     # Setup Python with bst
     - uses: actions/setup-python@v5
       with: