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Current state of the BEP (NOT FOR MERGING) #24

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Current state of the BEP (NOT FOR MERGING) #24

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7a58c97
ENH: Restore diffusion derivatives
effigies Aug 1, 2019
86facea
MAINT: Split out tractography
oesteban Sep 18, 2019
578079f
Merge pull request #9 from bids-standard/maint/split-tractography
arokem Sep 18, 2019
5ab7dc3
First commit for restructuring of DWI derivatives
Lestropie Jul 4, 2019
1beda57
BEP016: Small fixes, and try to get links to headers working
Lestropie Jul 16, 2019
1fd477c
BEP016: More updates of internal header links
Lestropie Jul 16, 2019
a462603
BEP016: Minor tweaks from first feedback round
Lestropie Aug 16, 2019
021cfd5
BEP016: Try to get links working within tables
Lestropie Aug 16, 2019
899a676
BEP016: More minor tweaking
Lestropie Aug 16, 2019
48c24dc
BEP016: Transpose SH volume count tables
Lestropie Aug 16, 2019
c092f48
BEP016: Provide example for parameter definitions
Lestropie Sep 11, 2019
7fe44f9
BEP016: Change to single-file diffusion models
Lestropie Sep 11, 2019
7eb44cb
BEP016: Initial explanation of filename
Lestropie Sep 11, 2019
4bc2b95
BEP016: File naming clarification
Lestropie Sep 11, 2019
f07489d
BEP016: Spelling fix
Lestropie Sep 11, 2019
5d14ffa
BEP016: Fix missing anchor links
Lestropie Sep 11, 2019
a804aeb
BEP016: Move orientation specification
Lestropie Sep 18, 2019
77a732f
Merge pull request #5 from bids-standard/dwi_derivatives_restructure
oesteban Sep 23, 2019
1a0f221
Merge remote-tracking branch 'upstream/master' into bep-016
effigies Jun 14, 2021
7210dd7
Merge remote-tracking branch 'bids-specification/master' into bep-016
Lestropie Nov 16, 2021
7227a75
BEP016: Revise SH description
Lestropie Nov 22, 2021
3c412f6
BEP016: Initial conformity to markdown formatting
Lestropie Nov 22, 2021
a5f4514
BEP016: More formatting conformity changes
Lestropie Nov 22, 2021
0dccc99
BEP016: More formatting conformity changes
Lestropie Nov 22, 2021
f237b8b
BEP016: Attempted fixes to table cell padding
Lestropie Nov 22, 2021
4c5e388
BEP016: Minor fix to tractography derivatives for CI pass
Lestropie Nov 22, 2021
3975051
Merge pull request #30 from bids-standard/remark_fixes
Lestropie Nov 22, 2021
b92e919
Merge branch 'bep-016' into sh_description_cherrypick
Lestropie Nov 22, 2021
158586f
BEP016: Modify nomenclature around MRtrix3 SH coefficients
Lestropie Nov 22, 2021
6ab7130
BEP016: Revise preprocessed DWI data example
Lestropie Nov 23, 2021
4c7b81b
BEP016: Remove SH Descoteaux placeholder
Lestropie Nov 30, 2021
80e19fe
BEP016: Remove majority of models
Lestropie Dec 1, 2021
beb7a16
BEP016: Formatting fix following removal of models
Lestropie Dec 1, 2021
8f18d91
Merge pull request #40 from bids-standard/remove_models
arokem Dec 1, 2021
29fde11
Merge pull request #37 from bids-standard/revise_preprocessed
francopestilli Dec 1, 2021
9ee4aa6
Merge pull request #28 from bids-standard/sh_description_cherrypick
francopestilli Dec 2, 2021
fcff8ac
BEP016: Strip out tractography content
Lestropie Dec 2, 2021
bab2900
Fixes a typo caught by codespell
arokem Dec 2, 2021
3874db9
Merge pull request #45 from bids-standard/typo-fix
Lestropie Dec 2, 2021
c9d2748
BEP016: Initial draft of common filename suffix "model"
Lestropie Dec 2, 2021
618ee5b
BEP016: Rename "dti" to "tensor"
Lestropie Dec 2, 2021
39fa5b0
Merge pull request #42 from bids-standard/strip_tractography
arokem Dec 8, 2021
844f9a5
Merge pull request #47 from bids-standard/rename_tensor
Lestropie Jan 11, 2022
4e03dc7
Rename "_parameter-" entity to "_param-"
Lestropie Aug 9, 2022
a83d607
DWI derivatives: Compulsory "parameter" entity
Lestropie Aug 9, 2022
ab05216
Merge pull request #51 from bids-standard/param_entity
Lestropie Aug 10, 2022
653766d
Merge remote-tracking branch 'origin/bep-016' into compulsory_paramet…
Lestropie Aug 10, 2022
c7cfbaf
DWI derivatives: Resolution between content changes
Lestropie Aug 10, 2022
46d3eb4
Merge remote-tracking branch 'origin/bep-016' into model_suffix
Lestropie Aug 16, 2022
d3bbb86
DWI derivatives: Fix tensor model example
Lestropie Aug 16, 2022
d86b7cd
DWI derivatives: "model" as entity
Lestropie Aug 16, 2022
e101e50
Merge pull request #46 from bids-standard/model_suffix
francopestilli Sep 12, 2022
2b7f88d
Merge branch 'bep-016' into compulsory_parameter_entity
Lestropie Sep 12, 2022
143d1cc
Merge pull request #52 from bids-standard/compulsory_parameter_entity
Lestropie Sep 12, 2022
d5bda6d
Merge branch 'bep-016' into model_entity
Lestropie Sep 12, 2022
ec50c47
Merge branch 'master' into bep-016
Lestropie Sep 12, 2022
e485551
Merge pull request #57 from bids-standard/model_entity
Lestropie Sep 12, 2022
a453274
DWI models: Restore renaming "dti" to "tensor"
Lestropie Sep 12, 2022
8ca6f53
Merge pull request #60 from bids-standard/restore_rename_tensor
Lestropie Sep 12, 2022
4746056
BEP016: Remove reference to old terminology
Lestropie Sep 13, 2022
4118ce0
Merge pull request #63 from bids-standard/revert_intrinsic
Lestropie Sep 13, 2022
c13031e
BEP016: Revert "_param-all"
Lestropie Sep 13, 2022
2b40cb7
Merge pull request #64 from bids-standard/no_paramall
Lestropie Sep 13, 2022
4489a0c
BEP016: Adopt "model fit parameters" terminology
Lestropie Sep 13, 2022
f4a7239
BEP016: Remove references to removed "pdf" data representation
Lestropie Sep 13, 2022
419b25f
Merge pull request #65 from bids-standard/model_fit_parameters
Lestropie Sep 13, 2022
ed53944
Merge pull request #66 from bids-standard/remove_pdf
Lestropie Sep 13, 2022
eddad22
DWI derivatives: Make tensor a data representation
Lestropie Oct 7, 2022
bcd768c
DWI derivatives: Fix ModelDescription in exemplars
Lestropie Oct 7, 2022
c1814fa
Merge pull request #75 from bids-standard/model_description
Lestropie Oct 7, 2022
3ece540
update based on current BIDS spec master
PeerHerholz Nov 10, 2022
2c4932f
Merge pull request #78 from PeerHerholz/update_specification
arokem Nov 14, 2022
235552a
Merge branch 'master' into bep-016
arokem Nov 14, 2022
53f7484
Merge branch 'master' into bep-016
arokem Nov 28, 2022
6da90d4
Merge branch 'master' into bep-016
PeerHerholz Apr 25, 2023
7994706
Adds the descoteaux 2007 convention.
arokem Apr 25, 2023
f7e6f43
Merge pull request #80 from arokem/adds_descoteaux
arokem Apr 25, 2023
2fa5940
Change from strange html encoding to "<" and ">"
arokem Apr 29, 2023
8dee2f0
Merge pull request #81 from arokem/adds_descoteaux
arokem Apr 29, 2023
dd8fe32
Fix codespell-detected British spellings.
arokem Apr 29, 2023
a0cadd3
Merge pull request #82 from arokem/fix-british-spellings
arokem Jun 27, 2023
9a68b41
Merge branch 'master' into bep-016
arokem Jun 28, 2023
7a605fd
Replace the latin "etc" with ellipses.
arokem Jun 28, 2023
ab2b4cd
Merge pull request #83 from arokem/fix-validation
arokem Jun 29, 2023
0a04ee6
Bump actions/checkout from 3 to 4
dependabot[bot] Sep 11, 2023
48a6a42
Merge branch 'master' into bep-016
arokem Mar 29, 2024
c6e50fc
Merge branch 'bep-016' into tensor_as_representation
Lestropie Apr 23, 2024
ab173a5
Merge pull request #74 from bids-standard/tensor_as_representation
Lestropie Apr 23, 2024
c62a2d7
BEP016: Major changes
Lestropie Apr 26, 2024
a2c35b8
BEP016: Fis JSON formatting in demonstrative examples
Lestropie Apr 26, 2024
8672cbe
Diffusion models: Forbid negative spherical coordinate radius
Lestropie Apr 26, 2024
7a123d5
Diffusion model derivatives: Spelling fixes
arokem May 1, 2024
1b50e3e
Merge pull request #92 from bids-standard/dwimap_and_no_inheritance
arokem May 14, 2024
148f9fa
Merge branch 'master' into bep-016
arokem May 14, 2024
4cf0723
Apply US spelling. Addresses current codespell CI failure.
arokem May 14, 2024
1317863
Markdown table linting
arokem May 14, 2024
77dbfbd
Get rid of a few latin phrases (i.e., "e.g.").
arokem May 14, 2024
156359a
DWI models: Define "bvec" orientation reference
Lestropie May 15, 2024
adb0e62
DWI models: Force presence of "param" entity
Lestropie May 15, 2024
2ac5549
DWI models: add "ParameterURL" metadata field
Lestropie May 15, 2024
4b8c56e
Merge remote-tracking branch 'origin/bep-016' into dependabot/github_…
Lestropie May 15, 2024
3bb9da0
Clarify metadata fields relevance (#102)
Lestropie May 15, 2024
9163f9d
Merge pull request #87 from bids-standard/dependabot/github_actions/a…
Lestropie May 15, 2024
9c3ceda
Merge pull request #97 from arokem/us-spelling
Lestropie May 15, 2024
73e4252
Merge branch 'bep-016' into metadata_parameterurl
arokem May 15, 2024
37b1bad
Merge pull request #101 from bids-standard/metadata_parameterurl
arokem May 15, 2024
c73cf54
Merge branch 'bep-016' into force_param_entity
arokem May 15, 2024
3f5f38d
Merge pull request #99 from bids-standard/force_param_entity
arokem May 15, 2024
e4df23c
Removes one more i.e.
arokem May 15, 2024
a26ccbd
Merge pull request #103 from arokem/one_more_latin
Lestropie May 15, 2024
900381c
BEP016: Utilize filesystem macro
Lestropie May 16, 2024
c531a0a
BEP016: Reformat demonstrative examples
Lestropie May 16, 2024
9cb1e09
BEP016: Don't use filesystem macros for templates
Lestropie May 17, 2024
f115ec4
BEP016: Comment filesystem macros
Lestropie May 17, 2024
1fb734f
Merge pull request #105 from bids-standard/filesystem_macros
Lestropie May 17, 2024
b093ac1
DWI models: Update bvec reference
Lestropie Jun 5, 2024
d56816d
Merge branch 'master' into bep-016
arokem Jun 5, 2024
bda570f
Merge remote-tracking branch 'origin/bep-016' into bvec_reference_axes
Lestropie Jun 5, 2024
1ce38c2
Merge pull request #98 from bids-standard/bvec_reference_axes
Lestropie Jun 5, 2024
edab0fd
Merge branch 'master' into bep-016
arokem Aug 20, 2024
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