Merge pull request #128 from yarikoptic/enh-examples-gen #276
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name: Parsers | |
on: [pull_request, push] | |
jobs: | |
run: | |
runs-on: ubuntu-latest | |
steps: | |
- uses: actions/checkout@master | |
- name: Setup Python | |
uses: actions/setup-python@master | |
with: | |
python-version: 3.10.6 | |
- name: Install dependencies | |
run: | | |
python -m pip install --upgrade pip | |
pip install pytest | |
pip install -r dev-requirements.txt | |
- name: Test SPM parser | |
run: | | |
curl -LJO https://raw.githubusercontent.com/incf-nidash/nidmresults-examples/master/spm_explicit_mask/batch.m | |
python -m bids_prov.spm.spm_parser --input_file batch.m --output_file explicit_mask.json | |
- name: Test FSL Parser | |
run: | | |
curl -LJO https://raw.githubusercontent.com/incf-nidash/nidmresults-examples/master/fsl_default/report_log.html | |
python -m bids_prov.fsl.fsl_parser --input_file report_log.html --output_file tests.json | |
- name: Test AFNI Parser | |
run: | | |
wget https://raw.githubusercontent.com/incf-nidash/nidmresults-examples/master/afni_default/subject_results/group.DS0011/subj.sub_001/proc.sub_001 | |
python -m bids_prov.afni.afni_parser --input_file proc.sub_001 --output_file tests.json |