Add python2.7 standard lib to ubuntu installs

bids-apps · Jun 29, 2020 · c0cfb22 · c0cfb22
1 parent c52c7f0
commit c0cfb22
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Showing 3 changed files with 11 additions and 7 deletions.
diff --git a/Dockerfile b/Dockerfile
@@ -1,5 +1,5 @@
 # Generated by Neurodocker version 0.4.2-3-gf7055a1
-# Timestamp: 2020-06-29 16:04:34 UTC
+# Timestamp: 2020-06-29 18:20:44 UTC
 # 
 # Thank you for using Neurodocker. If you discover any issues
 # or ways to improve this software, please submit an issue or
@@ -53,6 +53,7 @@ RUN apt-get update -qq \
            libxt-dev \
            libxext-dev \
            libglu1-mesa \
+           libpython2.7-stdlib \
     && apt-get clean \
     && rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/*
 
@@ -184,7 +185,8 @@ RUN echo '{ \
     \n        "libx11-dev", \
     \n        "libxt-dev", \
     \n        "libxext-dev", \
-    \n        "libglu1-mesa" \
+    \n        "libglu1-mesa", \
+    \n        "libpython2.7-stdlib" \
     \n      ] \
     \n    ], \
     \n    [ \

diff --git a/Singularity b/Singularity
@@ -1,5 +1,5 @@
 # Generated by Neurodocker version 0.4.2-3-gf7055a1
-# Timestamp: 2020-06-29 16:04:35 UTC
+# Timestamp: 2020-06-29 18:20:45 UTC
 # 
 # Thank you for using Neurodocker. If you discover any issues
 # or ways to improve this software, please submit an issue or
@@ -47,7 +47,8 @@ apt-get install -y -q --no-install-recommends \
     libx11-dev \
     libxt-dev \
     libxext-dev \
-    libglu1-mesa
+    libglu1-mesa \
+    libpython2.7-stdlib
 apt-get clean
 rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/*
 
@@ -151,7 +152,8 @@ echo '{
 \n        "libx11-dev",
 \n        "libxt-dev",
 \n        "libxext-dev",
-\n        "libglu1-mesa"
+\n        "libglu1-mesa",
+\n        "libpython2.7-stdlib"
 \n      ]
 \n    ],
 \n    [

diff --git a/generate_freesurfer_images.sh b/generate_freesurfer_images.sh
@@ -46,7 +46,7 @@ docker run --rm ${image} generate docker \
   --base ubuntu:xenial \
   --pkg-manager apt \
   --install tcsh bc tar libgomp1 perl-modules wget curl \
-    libsm-dev libx11-dev libxt-dev libxext-dev libglu1-mesa \
+    libsm-dev libx11-dev libxt-dev libxext-dev libglu1-mesa libpython2.7-stdlib\
   --freesurfer version=6.0.1 install_path=/opt/freesurfer \
   --miniconda use_env=base conda_install="python=3 pip pandas setuptools pandas=0.21.0" pip_install="nibabel" \
   --run-bash 'curl -sL https://deb.nodesource.com/setup_6.x | bash -' \
@@ -78,7 +78,7 @@ docker run --rm ${image} generate singularity \
   --base ubuntu:xenial \
   --pkg-manager apt \
   --install tcsh bc tar libgomp1 perl-modules wget curl \
-    libsm-dev libx11-dev libxt-dev libxext-dev libglu1-mesa \
+    libsm-dev libx11-dev libxt-dev libxext-dev libglu1-mesa libpython2.7-stdlib\
   --freesurfer version=6.0.1 install_path=/opt/freesurfer \
   --miniconda use_env=base conda_install="python=3 pip pandas setuptools pandas=0.21.0" pip_install="nibabel" \
   --run-bash 'curl -sL https://deb.nodesource.com/setup_6.x | bash -' \