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Seth Carbon edited this page May 10, 2017 · 2 revisions

Welcome to the BBOP Graph wiki!

Overview

To keep ourselves from repeating, probably the best overview at this point is in the README.org file found on the main code site here. This wiki covers the big picture and details that are not covered in the source code docs, demos, tests, and API docs; for those, see Other Resources at the bottom.

Graphs

A large chunk of BBOP is devoted to handling graphs–a natural development due to the developers’ desire to work with and visualize ontologies and phylogenic trees.

The current JS API for graphs can be found here. As far as the API is concerned, there is a single type of graph (not counting sub-classes). However, to prevent re-implementing complicated and fiddly reasoning in the client, GOlr supplies two types of graphs with different purposes in mind: the topology graph and the transitivity graph.

Other Resources

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