feat!: genome feature support

README.md

@@ -15,7 +15,7 @@ Reference data (genomes & annotations) service for the Bento platform.
 * Bento-style genome ingestion: **DONE**
 * API endpoint permissions: **DONE**
 * RefGet implementation: _Partially done_
-* Annotation service: **Not done**
+* Annotation service: _Partially done_
 * Tests: _Partially done_
 * Documentation: **Not done**
 

bento_reference_service/config.py

@@ -20,11 +20,14 @@ class Config(BentoBaseConfig):
     service_url_base_path: str = "http://127.0.0.1:5000"  # Base path to construct URIs from
 
     database_uri: str = "postgres://localhost:5432"
-    data_path: Path = Path(__file__).parent / "data"
+    file_ingest_tmp_dir: Path = Path(__file__).parent.parent / "tmp"  # Default to repository `tmp` folder
+    file_ingest_chunk_size: int = 1024 * 256  # 256 KiB at a time
 
     file_response_chunk_size: int = 1024 * 16  # 16 KiB at a time
     response_substring_limit: int = 10000  # TODO: Refine default
 
+    feature_response_record_limit: int = 1000
+
 
 @lru_cache()
 def get_config():