Merge pull request #69 from bento-platform/chore/update

chore: update base images, dependencies, and CI actions

.github/workflows/build.yml

@@ -20,10 +20,10 @@ jobs:
 
     steps:
       - name: Checkout
-        uses: actions/checkout@v3
+        uses: actions/checkout@v4
 
       - name: Run Bento build action
-        uses: bento-platform/[email protected].0
+        uses: bento-platform/[email protected].1
         with:
           registry: ghcr.io
           registry-username: ${{ github.actor }}

.github/workflows/lint.yml

@@ -8,7 +8,7 @@ jobs:
   lint:
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
       - uses: actions/setup-python@v4
         name: Set up Python
         with:

.github/workflows/test.yml

@@ -11,7 +11,7 @@ jobs:
       matrix:
         python-version: [ "3.10", "3.11" ]
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
       - uses: actions/setup-python@v4
         name: Set up Python
         with:

Dockerfile

@@ -1,4 +1,4 @@
-FROM ghcr.io/bento-platform/bento_base_image:python-debian-2023.07.17
+FROM ghcr.io/bento-platform/bento_base_image:python-debian-2023.09.08
 
 RUN apt-get update -y && \
     apt-get install gcc libffi-dev -y && \
@@ -10,7 +10,7 @@ RUN mkdir /wes
 # Install dependencies
 COPY pyproject.toml .
 COPY poetry.lock .
-RUN pip install --no-cache-dir gunicorn==20.1.0 && \
+RUN pip install --no-cache-dir gunicorn==21.2.0 && \
     poetry config virtualenvs.create false && \
     poetry install --without dev --no-root
 

dev.Dockerfile

@@ -1,4 +1,4 @@
-FROM ghcr.io/bento-platform/bento_base_image:python-debian-2023.07.17
+FROM ghcr.io/bento-platform/bento_base_image:python-debian-2023.09.08
 
 LABEL org.opencontainers.image.description="Local development image for Bento DRS."
 LABEL devcontainer.metadata='[{ \

pyproject.toml

@@ -1,6 +1,6 @@
 [tool.poetry]
 name = "chord-drs"
-version = "0.12.6"
+version = "0.13.0"
 description = "An implementation of a data repository system (as per GA4GH's specs) for the Bento platform."
 authors = ["David Lougheed <[email protected]>"]
 license = "LGPL-3.0"