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refact(utils): support new Katsu private overview response format #79

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merged 2 commits into from
Apr 12, 2024

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davidlougheed
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@gsfk gsfk left a comment

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Thanks for starting this one!.

There's some broken stuff here though, since package_biosample_and_experiment_stats() is written with the assumption that katsu private overview has roughly the same format as katsu api/search_overview. See katsu pr for details.

@davidlougheed
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updated katsu... should be compatible now

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gsfk commented Apr 12, 2024

almost there, only thing missing is handling for the extra nesting that's now around experiments

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oops

@davidlougheed davidlougheed marked this pull request as ready for review April 12, 2024 19:57
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gsfk commented Apr 12, 2024

better now, looks good

@gsfk gsfk self-requested a review April 12, 2024 20:01
@davidlougheed davidlougheed merged commit 0c7b4bf into master Apr 12, 2024
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@davidlougheed davidlougheed deleted the refact/new-katsu-private-overview branch April 12, 2024 20:34
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2 participants