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new cohort definitions
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@Tsemharb
Tsemharb committed Feb 7, 2023
1 parent b056818 commit 4700cec
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Showing 44 changed files with 23,236 additions and 31,281 deletions.
298 changes: 298 additions & 0 deletions inst/cohorts/101.json
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Original file line number Diff line number Diff line change
Expand Up @@ -185,6 +185,74 @@
"isExcluded" : false,
"includeDescendants" : true,
"includeMapped" : false
},
{
"concept" : {
"CONCEPT_ID" : 4264861,
"CONCEPT_NAME" : "pM1c: Distant metastasis site other than bone or non-regional lymph node(s) (prostate)",
"STANDARD_CONCEPT" : "S",
"STANDARD_CONCEPT_CAPTION" : "Standard",
"INVALID_REASON" : "V",
"INVALID_REASON_CAPTION" : "Valid",
"CONCEPT_CODE" : "397215009",
"DOMAIN_ID" : "Condition",
"VOCABULARY_ID" : "SNOMED",
"CONCEPT_CLASS_ID" : "Clinical Finding"
},
"isExcluded" : false,
"includeDescendants" : false,
"includeMapped" : false
},
{
"concept" : {
"CONCEPT_ID" : 4264288,
"CONCEPT_NAME" : "pM1b: Distant metastasis to bone(s) (prostate)",
"STANDARD_CONCEPT" : "S",
"STANDARD_CONCEPT_CAPTION" : "Standard",
"INVALID_REASON" : "V",
"INVALID_REASON_CAPTION" : "Valid",
"CONCEPT_CODE" : "397214008",
"DOMAIN_ID" : "Condition",
"VOCABULARY_ID" : "SNOMED",
"CONCEPT_CLASS_ID" : "Clinical Finding"
},
"isExcluded" : false,
"includeDescendants" : false,
"includeMapped" : false
},
{
"concept" : {
"CONCEPT_ID" : 4246703,
"CONCEPT_NAME" : "pM1a: Distant metastasis to non-regional lymph node(s) (prostate)",
"STANDARD_CONCEPT" : "S",
"STANDARD_CONCEPT_CAPTION" : "Standard",
"INVALID_REASON" : "V",
"INVALID_REASON_CAPTION" : "Valid",
"CONCEPT_CODE" : "397213002",
"DOMAIN_ID" : "Condition",
"VOCABULARY_ID" : "SNOMED",
"CONCEPT_CLASS_ID" : "Clinical Finding"
},
"isExcluded" : false,
"includeDescendants" : false,
"includeMapped" : false
},
{
"concept" : {
"CONCEPT_ID" : 763131,
"CONCEPT_NAME" : "Neoplasm of prostate distant metastasis staging category M1: Distant metastasis",
"STANDARD_CONCEPT" : "S",
"STANDARD_CONCEPT_CAPTION" : "Standard",
"INVALID_REASON" : "V",
"INVALID_REASON_CAPTION" : "Valid",
"CONCEPT_CODE" : "436401000124103",
"DOMAIN_ID" : "Condition",
"VOCABULARY_ID" : "SNOMED",
"CONCEPT_CLASS_ID" : "Clinical Finding"
},
"isExcluded" : false,
"includeDescendants" : false,
"includeMapped" : false
}
]
}
Expand Down Expand Up @@ -558,6 +626,23 @@
"isExcluded" : true,
"includeDescendants" : true,
"includeMapped" : false
},
{
"concept" : {
"CONCEPT_ID" : 4312326,
"CONCEPT_NAME" : "Neoplasm, malignant (primary)",
"STANDARD_CONCEPT" : "S",
"STANDARD_CONCEPT_CAPTION" : "Standard",
"INVALID_REASON" : "V",
"INVALID_REASON_CAPTION" : "Valid",
"CONCEPT_CODE" : "86049000",
"DOMAIN_ID" : "Observation",
"VOCABULARY_ID" : "SNOMED",
"CONCEPT_CLASS_ID" : "Morph Abnormality"
},
"isExcluded" : false,
"includeDescendants" : true,
"includeMapped" : false
}
]
}
Expand Down Expand Up @@ -2095,6 +2180,193 @@
"isExcluded" : false,
"includeDescendants" : true,
"includeMapped" : false
},
{
"concept" : {
"CONCEPT_ID" : 2110046,
"CONCEPT_NAME" : "Cryosurgical ablation of the prostate (includes ultrasonic guidance and monitoring)",
"STANDARD_CONCEPT" : "S",
"STANDARD_CONCEPT_CAPTION" : "Standard",
"INVALID_REASON" : "V",
"INVALID_REASON_CAPTION" : "Valid",
"CONCEPT_CODE" : "55873",
"DOMAIN_ID" : "Procedure",
"VOCABULARY_ID" : "CPT4",
"CONCEPT_CLASS_ID" : "CPT4"
},
"isExcluded" : false,
"includeDescendants" : true,
"includeMapped" : false
},
{
"concept" : {
"CONCEPT_ID" : 2110035,
"CONCEPT_NAME" : "Prostatectomy (including control of postoperative bleeding, vasectomy, meatotomy, urethral calibration and/or dilation, and internal urethrotomy); suprapubic, subtotal, 1 or 2 stages",
"STANDARD_CONCEPT" : "S",
"STANDARD_CONCEPT_CAPTION" : "Standard",
"INVALID_REASON" : "V",
"INVALID_REASON_CAPTION" : "Valid",
"CONCEPT_CODE" : "55821",
"DOMAIN_ID" : "Procedure",
"VOCABULARY_ID" : "CPT4",
"CONCEPT_CLASS_ID" : "CPT4"
},
"isExcluded" : false,
"includeDescendants" : true,
"includeMapped" : false
},
{
"concept" : {
"CONCEPT_ID" : 2108678,
"CONCEPT_NAME" : "Adjuvant (ie, in combination with external beam radiotherapy to the prostate for prostate cancer) hormonal therapy (gonadotropin-releasing hormone [GnRH] agonist or antagonist) prescribed/administered (PRCA)",
"STANDARD_CONCEPT" : "S",
"STANDARD_CONCEPT_CAPTION" : "Standard",
"INVALID_REASON" : "V",
"INVALID_REASON_CAPTION" : "Valid",
"CONCEPT_CODE" : "4164F",
"DOMAIN_ID" : "Observation",
"VOCABULARY_ID" : "CPT4",
"CONCEPT_CLASS_ID" : "CPT4"
},
"isExcluded" : false,
"includeDescendants" : true,
"includeMapped" : false
},
{
"concept" : {
"CONCEPT_ID" : 2101059,
"CONCEPT_NAME" : "Anesthesia for; perineal prostatectomy",
"STANDARD_CONCEPT" : "S",
"STANDARD_CONCEPT_CAPTION" : "Standard",
"INVALID_REASON" : "V",
"INVALID_REASON_CAPTION" : "Valid",
"CONCEPT_CODE" : "00908",
"DOMAIN_ID" : "Procedure",
"VOCABULARY_ID" : "CPT4",
"CONCEPT_CLASS_ID" : "CPT4"
},
"isExcluded" : false,
"includeDescendants" : false,
"includeMapped" : false
},
{
"concept" : {
"CONCEPT_ID" : 2777698,
"CONCEPT_NAME" : "Excision of Prostate, Open Approach",
"STANDARD_CONCEPT" : "S",
"STANDARD_CONCEPT_CAPTION" : "Standard",
"INVALID_REASON" : "V",
"INVALID_REASON_CAPTION" : "Valid",
"CONCEPT_CODE" : "0VB00ZZ",
"DOMAIN_ID" : "Procedure",
"VOCABULARY_ID" : "ICD10PCS",
"CONCEPT_CLASS_ID" : "ICD10PCS"
},
"isExcluded" : false,
"includeDescendants" : false,
"includeMapped" : false
},
{
"concept" : {
"CONCEPT_ID" : 40490346,
"CONCEPT_NAME" : "Transrectal high intensity focused ultrasound ablation of prostate",
"STANDARD_CONCEPT" : "S",
"STANDARD_CONCEPT_CAPTION" : "Standard",
"INVALID_REASON" : "V",
"INVALID_REASON_CAPTION" : "Valid",
"CONCEPT_CODE" : "446941000",
"DOMAIN_ID" : "Procedure",
"VOCABULARY_ID" : "SNOMED",
"CONCEPT_CLASS_ID" : "Procedure"
},
"isExcluded" : false,
"includeDescendants" : false,
"includeMapped" : false
},
{
"concept" : {
"CONCEPT_ID" : 2110043,
"CONCEPT_NAME" : "Exposure of prostate, any approach, for insertion of radioactive substance; with bilateral pelvic lymphadenectomy, including external iliac, hypogastric and obturator nodes",
"STANDARD_CONCEPT" : "S",
"STANDARD_CONCEPT_CAPTION" : "Standard",
"INVALID_REASON" : "V",
"INVALID_REASON_CAPTION" : "Valid",
"CONCEPT_CODE" : "55865",
"DOMAIN_ID" : "Procedure",
"VOCABULARY_ID" : "CPT4",
"CONCEPT_CLASS_ID" : "CPT4"
},
"isExcluded" : false,
"includeDescendants" : false,
"includeMapped" : false
},
{
"concept" : {
"CONCEPT_ID" : 2789830,
"CONCEPT_NAME" : "Beam Radiation of Prostate using Photons >10 MeV",
"STANDARD_CONCEPT" : "S",
"STANDARD_CONCEPT_CAPTION" : "Standard",
"INVALID_REASON" : "V",
"INVALID_REASON_CAPTION" : "Valid",
"CONCEPT_CODE" : "DV002ZZ",
"DOMAIN_ID" : "Procedure",
"VOCABULARY_ID" : "ICD10PCS",
"CONCEPT_CLASS_ID" : "ICD10PCS"
},
"isExcluded" : false,
"includeDescendants" : false,
"includeMapped" : false
},
{
"concept" : {
"CONCEPT_ID" : 709928,
"CONCEPT_NAME" : "Transurethral ablation of malignant prostate tissue by high-energy water vapor thermotherapy, including intraoperative imaging and needle guidance",
"STANDARD_CONCEPT" : "S",
"STANDARD_CONCEPT_CAPTION" : "Standard",
"INVALID_REASON" : "V",
"INVALID_REASON_CAPTION" : "Valid",
"CONCEPT_CODE" : "0582T",
"DOMAIN_ID" : "Procedure",
"VOCABULARY_ID" : "CPT4",
"CONCEPT_CLASS_ID" : "CPT4"
},
"isExcluded" : false,
"includeDescendants" : false,
"includeMapped" : false
},
{
"concept" : {
"CONCEPT_ID" : 42733763,
"CONCEPT_NAME" : "Transurethral resection of prostate; first stage of two-stage resection (partial resection) (Deprecated)",
"STANDARD_CONCEPT" : "S",
"STANDARD_CONCEPT_CAPTION" : "Standard",
"INVALID_REASON" : "V",
"INVALID_REASON_CAPTION" : "Valid",
"CONCEPT_CODE" : "52612",
"DOMAIN_ID" : "Procedure",
"VOCABULARY_ID" : "CPT4",
"CONCEPT_CLASS_ID" : "CPT4"
},
"isExcluded" : false,
"includeDescendants" : false,
"includeMapped" : false
},
{
"concept" : {
"CONCEPT_ID" : 42733764,
"CONCEPT_NAME" : "Transurethral resection of prostate; second stage of two-stage resection (resection completed) (Deprecated)",
"STANDARD_CONCEPT" : "S",
"STANDARD_CONCEPT_CAPTION" : "Standard",
"INVALID_REASON" : "V",
"INVALID_REASON_CAPTION" : "Valid",
"CONCEPT_CODE" : "52614",
"DOMAIN_ID" : "Procedure",
"VOCABULARY_ID" : "CPT4",
"CONCEPT_CLASS_ID" : "CPT4"
},
"isExcluded" : false,
"includeDescendants" : false,
"includeMapped" : false
}
]
}
Expand Down Expand Up @@ -2509,6 +2781,32 @@
"Count" : 0,
"IsDistinct" : false
}
},
{
"Criteria" : {
"Observation" : {
"CodesetId" : 3,
"ObservationTypeExclude" : false
}
},
"StartWindow" : {
"Start" : {
"Coeff" : -1
},
"End" : {
"Days" : 30,
"Coeff" : 1
},
"UseIndexEnd" : false,
"UseEventEnd" : false
},
"RestrictVisit" : false,
"IgnoreObservationPeriod" : false,
"Occurrence" : {
"Type" : 0,
"Count" : 0,
"IsDistinct" : false
}
}
],
"DemographicCriteriaList" : [],
Expand Down
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