Update with adni-to-bids

bclenet · Nov 9, 2021 · a01172e · a01172e
1 parent 0bb33cd
commit a01172e
Showing 1 changed file with 39 additions and 0 deletions.
diff --git a/examples/clinica_pipelines/adni-to-bids.jsonld b/examples/clinica_pipelines/adni-to-bids.jsonld
@@ -0,0 +1,39 @@
+{
+	"@context": "https://raw.githubusercontent.com/omar-rifai/Provenance/main/context.json",
+	"records": {
+		"prov:Agent": [
+			{
+				"@id": "RRID:Clinica",
+				"@type": "prov:SoftwareAgent",
+				"label": "Clinica"
+			}
+		],
+		"prov:Activity": [
+			{
+				"@id": "uuid:38133b39-f2fe-4746-aa3c-e3eca1b8abb4",
+				"label": "adni-to-bids",
+				"command": "clinica convert adni-to-bids src clinical_data bids ",
+				"parameters": {
+					"src": "/path/adni_dir",
+					"clinical_data": "/path/clinical/data/",
+					"bids": "/path/to/bids"
+				},
+				"wasAssociatedWith": "RRID:Clinica",
+				"used": "uuid:0c18a16e-11e9-42cf-b004-019bc6aaa76b"
+			}
+		],
+		"prov:Entity": [
+			{
+				"@id": "uuid:0c18a16e-11e9-42cf-b004-019bc6aaa76b",
+				"label": "Dicom 022_S_0004",
+				"prov:atLocation": "/path/to/adni/data/raw/"
+			},
+			{
+				"@id": "uuid:6cada670-8bf2-44ef-80ae-71796eb5ecd7",
+				"label": "sub-ADNI022S0004_ses-M00_T1w.nii.gz",
+				"atLocation": "/path/to/bids/sub-ADNI022S0004/ses-M00/anat/sub-ADNI022S0004_ses-M00_T1w.nii.gz",
+				"wasGeneratedBy": "uuid:38133b39-f2fe-4746-aa3c-e3eca1b8abb4"
+			}
+		]
+	}
+}