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Merge pull request #67 from omar-rifai/example_clinica_pipelines #1

Merge pull request #67 from omar-rifai/example_clinica_pipelines

Merge pull request #67 from omar-rifai/example_clinica_pipelines #1

name: Parsers
on: [pull_request, push]
jobs:
run:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@master
- name: Setup Python
uses: actions/setup-python@master
with:
python-version: 3.10.6
- name: Install dependencies
run: |
python -m pip install --upgrade pip
pip install pytest
pip install -r dev-requirements.txt
- name: Test SPM parser
run: |
curl -LJO https://raw.githubusercontent.com/incf-nidash/nidmresults-examples/master/spm_explicit_mask/batch.m
python -m bids_prov.spm.spm_parser --input_file batch.m --output_file explicit_mask.json
- name: Test FSL Parser
run: |
curl -LJO https://raw.githubusercontent.com/incf-nidash/nidmresults-examples/master/fsl_default/report_log.html
python -m bids_prov.fsl.fsl_parser --input_file report_log.html --output_file tests.json
- name: Test AFNI Parser
run: |
wget https://raw.githubusercontent.com/incf-nidash/nidmresults-examples/master/afni_default/subject_results/group.DS0011/subj.sub_001/proc.sub_001
python -m bids_prov.afni.afni_parser --input_file proc.sub_001 --output_file tests.json