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Release/v1.12.0 #102

Merged
merged 24 commits into from
Sep 11, 2023
Merged

Release/v1.12.0 #102

merged 24 commits into from
Sep 11, 2023

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mathieulemieux
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Feature:

  • Add type screening and length threshold for structural variant matching
  • Add dataset file reference for tests

Bugfix:

  • Fix relevance filtering for cancer predisposition function

dustinbleile and others added 24 commits June 13, 2023 12:41
@dustinbleile
lint - imports - remove unused import
9218952
@dustinbleile
lint - remove black version restriction
b001804
@dustinbleile
black -C -l 100
31bd2f6
@dustinbleile
Merge pull request #95 from bcgsc/refactor/lint_black_S
8afa8ed 
Refactor/lint black s
@dustinbleile
Merge branch 'master' of https://github.com/bcgsc/pori_graphkb_python …
4335212 
…into backmerge_master
@dustinbleile
Merge pull request #97 from bcgsc/backmerge_master
bf36312 
Backmerge master
@mathieulemieux
Add structural variant type constants
dc32b4f
@mathieulemieux
Add type_screening()
ddfb1cb
@mathieulemieux
Ref to type_screening in match_positional_variant
8b59105
@mathieulemieux
Add test class TestTypeScreening
9f1c2c4
@mathieulemieux
black formating
c9471a9
@mathieulemieux
Grouping constants in type_screening()
ea1f7b7
@mathieulemieux
Add dataset file for tests
066cc08
@mathieulemieux
Add tests for matching structural variants
4a3b5f4
@mathieulemieux
Add flag to match_positional_variant()
bd268b4
@mathieulemieux
Fix arg name in tests
8bf9c85
@mathieulemieux
Merge pull request #99 from bcgsc/bugfix/KBDEV-1056-matching-bug
6e44017 
Bugfix/kbdev 1056 matching bug
@mathieulemieux
Fix relevance filter for cancer predisposition
dcc89b2
@mathieulemieux
Black formatting
52195e8
@mathieulemieux
Fix threshold for structural variants
f639044
@mathieulemieux
Merge pull request #101 from bcgsc/bugfix/KBDEV-1081-structural-varia…
bb07069 
…nt-threshold

Fix threshold for structural variants
@mathieulemieux
Merge branch 'develop' into bugfix/KBDEV-1080-fix-get-cancer-predispo…
ad1312a 
…sition-info
@mathieulemieux
Merge pull request #100 from bcgsc/bugfix/KBDEV-1080-fix-get-cancer-p…
d1f1fa7 
…redisposition-info

Bugfix/kbdev 1080 fix get cancer predisposition info
@mathieulemieux
Update release version
89847ba
@mathieulemieux mathieulemieux merged commit 665b82a into master Sep 11, 2023
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Reviewers

@dustinbleile dustinbleile dustinbleile approved these changes

@elewis2 elewis2 elewis2 approved these changes

@mattdoug604 mattdoug604 Awaiting requested review from mattdoug604

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3 participants
@mathieulemieux @elewis2 @dustinbleile