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BugFix: Change itis_tsn column type in CSV validator #1175

BugFix: Change itis_tsn column type in CSV validator

BugFix: Change itis_tsn column type in CSV validator #1175

Workflow file for this run

# Clean out all deployment artifacts when a PR is closed, but not merged.
# Will attempt to remove all artifacts from any PR that was opened against any branch (and then closed (not merged)).
name: Clean Closed PR Artifacts
on:
pull_request:
types: [closed]
jobs:
clean:
name: Clean Deployment Artifacts for API and App in Dev and Tools environment
runs-on: ubuntu-latest
timeout-minutes: 20
# Don't run if the PR was merged
if: ${{ github.event.pull_request.merged != true }}
env:
PR_NUMBER: ${{ github.event.number }}
steps:
# Install Node - for `node` and `npm` commands
# Note: This already uses actions/cache internally, so repeat calls in subsequent jobs are not a performance hit
- name: Setup Node.js
uses: actions/setup-node@v4
with:
node-version: 20
# Load repo from cache
- name: Cache repo
uses: actions/cache@v4
id: cache-repo
env:
cache-name: cache-repo
with:
path: ${{ github.workspace }}/*
key: ${{ runner.os }}-build-${{ env.cache-name }}-${{ github.sha }}
# Checkout the branch if not restored via cache
- name: Checkout Target Branch
if: steps.cache-repo.outputs.cache-hit != 'true'
uses: actions/checkout@v4
with:
persist-credentials: false
# Log in to OpenShift.
# Note: The secrets needed to log in are NOT available if the PR comes from a FORK.
# PR's must originate from a branch off the original repo or else all openshift `oc` commands will fail.
- name: Log in to OpenShift
run: oc login --token=${{ secrets.TOOLS_SA_TOKEN }} --server=https://api.silver.devops.gov.bc.ca:6443
# Clean the app deployment artifacts
- name: Clean APP Deployment
working-directory: "app/.pipeline/"
run: |
npm ci
DEBUG=* npm run clean -- --pr=$PR_NUMBER --env=build
DEBUG=* npm run clean -- --pr=$PR_NUMBER --env=dev
# Clean the database build/deployment artifacts
- name: Clean Database Artifacts
working-directory: "database/.pipeline/"
run: |
npm ci
DEBUG=* npm run clean -- --pr=$PR_NUMBER --env=build
DEBUG=* npm run clean -- --pr=$PR_NUMBER --env=dev
# Clean the api deployment artifacts
- name: Clean API Deployment
working-directory: "api/.pipeline/"
run: |
npm ci
DEBUG=* npm run clean -- --pr=$PR_NUMBER --env=build
DEBUG=* npm run clean -- --pr=$PR_NUMBER --env=dev
# Clean the reamaining build/deployment artifacts
- name: Clean remaining Artifacts
env:
POD_SELECTOR: biohubbc
run: |
oc --namespace af2668-dev get all,pvc,secret,pods,ReplicationController,DeploymentConfig,HorizontalPodAutoscaler,imagestreamtag -o name | grep $POD_SELECTOR | grep $PR_NUMBER | awk '{print "oc delete --ignore-not-found " $1}' | bash
oc --namespace af2668-tools get all,pvc,secret,pods,ReplicationController,DeploymentConfig,HorizontalPodAutoscaler,imagestreamtag -o name | grep $POD_SELECTOR | grep $PR_NUMBER | awk '{print "oc delete --ignore-not-found " $1}' | bash