Update main.yml #7
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Tests | |
| on: | |
| push: | |
| branches: | |
| - main | |
| pull_request: | |
| branches: | |
| - main | |
| jobs: | |
| Testing: | |
| runs-on: ${{ matrix.os }} | |
| continue-on-error: false | |
| strategy: | |
| fail-fast: true | |
| matrix: | |
| os: [ ubuntu-latest, macos-latest ] | |
| python-version: [ 3.11, 3.12 ] | |
| snakemake-version: [ 8 ] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| micromamba-version: "latest" | |
| environment-name: test-env | |
| condarc: | | |
| channels: | |
| - conda-forge | |
| - bioconda | |
| - defaults | |
| create-args: >- | |
| python=${{ matrix.python-version }} | |
| snakemake | |
| mamba | |
| make | |
| init-shell: bash | |
| cache-environment: true | |
| post-cleanup: all | |
| - name: Versions | |
| shell: bash -el {0} | |
| run: | | |
| micromamba activate test-env | |
| python -v | |
| snakemake -v | |
| - name: Test workflow (local test data) | |
| shell: bash -el {0} | |
| run: | | |
| micromamba activate test-env | |
| make format |