Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Introduce mm2pass command #8

Open
wants to merge 4 commits into
base: master
Choose a base branch
from
Open

Introduce mm2pass command #8

wants to merge 4 commits into from

Conversation

mparker2
Copy link
Member

@mparker2 mparker2 commented Mar 9, 2021

Added mm2pass command which wraps minimap2, samtools, and 2passtools score/filter, performing all the steps of two pass alignment.

@mparker2
Copy link
Member Author

todo: documentation

@MakeTheBrainHappy
Copy link

Great potential addition!

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

2 participants