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V0.2.7 #10

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Dec 6, 2023
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V0.2.7 #10

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394b8f2
Kernel denoiser signature changed
dgeorgiev21 Dec 6, 2023
7d69428
docs updated and fixed autosummary of classes to provide clsss-level …
dgeorgiev21 Dec 6, 2023
a5a2d66
docs updated and fixed autosummary of classes to provide clsss-level …
dgeorgiev21 Dec 6, 2023
d893e56
docs updated and fixed autosummary of classes to provide clsss-level …
dgeorgiev21 Dec 6, 2023
4ee5642
Merge pull request #9 from barahona-research-group/7-fix-kernel-denoi…
dgeorgiev21 Dec 6, 2023
1b6100d
added a note on data integration to docs
dgeorgiev21 Dec 6, 2023
c4e9f96
updated available preprocessing protocols and added 2 more
dgeorgiev21 Dec 6, 2023
aa80eb1
updated preprocessing protocols docs
dgeorgiev21 Dec 6, 2023
33baed0
updated version
dgeorgiev21 Dec 6, 2023
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# Sphinx build info version 1
# This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
config: 002bd834042657572c8268d0bd7eff8b
config: b9011271c24b0197b8ccf2f8ebd0aeb4
tags: 645f666f9bcd5a90fca523b33c5a78b7
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<li class="toctree-l1"><a class="reference internal" href="../datasets.html">Datasets</a></li>
<li class="toctree-l1"><a class="reference internal" href="../metrics.html">Metrics</a></li>
<li class="toctree-l1"><a class="reference internal" href="../plot.html">Data visualisation</a></li>
<li class="toctree-l1"><a class="reference internal" href="../preprocessing.html">Preprocessing</a></li>
<li class="toctree-l1"><a class="reference internal" href="../analysis.html">Analysis</a></li>
<li class="toctree-l1 has-children"><a class="reference internal" href="../preprocessing.html">Preprocessing</a><input class="toctree-checkbox" id="toctree-checkbox-1" name="toctree-checkbox-1" role="switch" type="checkbox"/><label for="toctree-checkbox-1"><div class="visually-hidden">Toggle navigation of Preprocessing</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul>
<li class="toctree-l2"><a class="reference internal" href="../generated/prepprocessing/misc/ramanspy.preprocessing.misc.Cropper.html">ramanspy.preprocessing.misc.Cropper</a></li>
<li class="toctree-l2"><a class="reference internal" href="../generated/prepprocessing/misc/ramanspy.preprocessing.misc.BackgroundSubtractor.html">ramanspy.preprocessing.misc.BackgroundSubtractor</a></li>
<li class="toctree-l2"><a class="reference internal" href="../generated/prepprocessing/despiking/ramanspy.preprocessing.despike.WhitakerHayes.html">ramanspy.preprocessing.despike.WhitakerHayes</a></li>
<li class="toctree-l2"><a class="reference internal" href="../generated/prepprocessing/denoising/ramanspy.preprocessing.denoise.SavGol.html">ramanspy.preprocessing.denoise.SavGol</a></li>
<li class="toctree-l2"><a class="reference internal" href="../generated/prepprocessing/denoising/ramanspy.preprocessing.denoise.Whittaker.html">ramanspy.preprocessing.denoise.Whittaker</a></li>
<li class="toctree-l2"><a class="reference internal" href="../generated/prepprocessing/denoising/ramanspy.preprocessing.denoise.Kernel.html">ramanspy.preprocessing.denoise.Kernel</a></li>
<li class="toctree-l2"><a class="reference internal" href="../generated/prepprocessing/denoising/ramanspy.preprocessing.denoise.Gaussian.html">ramanspy.preprocessing.denoise.Gaussian</a></li>
<li class="toctree-l2"><a class="reference internal" href="../generated/prepprocessing/baseline/ramanspy.preprocessing.baseline.ASLS.html">ramanspy.preprocessing.baseline.ASLS</a></li>
<li class="toctree-l2"><a class="reference internal" href="../generated/prepprocessing/baseline/ramanspy.preprocessing.baseline.IASLS.html">ramanspy.preprocessing.baseline.IASLS</a></li>
<li class="toctree-l2"><a class="reference internal" href="../generated/prepprocessing/baseline/ramanspy.preprocessing.baseline.AIRPLS.html">ramanspy.preprocessing.baseline.AIRPLS</a></li>
<li class="toctree-l2"><a class="reference internal" href="../generated/prepprocessing/baseline/ramanspy.preprocessing.baseline.ARPLS.html">ramanspy.preprocessing.baseline.ARPLS</a></li>
<li class="toctree-l2"><a class="reference internal" href="../generated/prepprocessing/baseline/ramanspy.preprocessing.baseline.DRPLS.html">ramanspy.preprocessing.baseline.DRPLS</a></li>
<li class="toctree-l2"><a class="reference internal" href="../generated/prepprocessing/baseline/ramanspy.preprocessing.baseline.IARPLS.html">ramanspy.preprocessing.baseline.IARPLS</a></li>
<li class="toctree-l2"><a class="reference internal" href="../generated/prepprocessing/baseline/ramanspy.preprocessing.baseline.ASPLS.html">ramanspy.preprocessing.baseline.ASPLS</a></li>
<li class="toctree-l2"><a class="reference internal" href="../generated/prepprocessing/baseline/ramanspy.preprocessing.baseline.Poly.html">ramanspy.preprocessing.baseline.Poly</a></li>
<li class="toctree-l2"><a class="reference internal" href="../generated/prepprocessing/baseline/ramanspy.preprocessing.baseline.ModPoly.html">ramanspy.preprocessing.baseline.ModPoly</a></li>
<li class="toctree-l2"><a class="reference internal" href="../generated/prepprocessing/baseline/ramanspy.preprocessing.baseline.Poly.html">ramanspy.preprocessing.baseline.Poly</a></li>
<li class="toctree-l2"><a class="reference internal" href="../generated/prepprocessing/baseline/ramanspy.preprocessing.baseline.ModPoly.html">ramanspy.preprocessing.baseline.ModPoly</a></li>
<li class="toctree-l2"><a class="reference internal" href="../generated/prepprocessing/baseline/ramanspy.preprocessing.baseline.Goldindec.html">ramanspy.preprocessing.baseline.Goldindec</a></li>
<li class="toctree-l2"><a class="reference internal" href="../generated/prepprocessing/baseline/ramanspy.preprocessing.baseline.IRSQR.html">ramanspy.preprocessing.baseline.IRSQR</a></li>
<li class="toctree-l2"><a class="reference internal" href="../generated/prepprocessing/baseline/ramanspy.preprocessing.baseline.CornerCutting.html">ramanspy.preprocessing.baseline.CornerCutting</a></li>
<li class="toctree-l2"><a class="reference internal" href="../generated/prepprocessing/baseline/ramanspy.preprocessing.baseline.FABC.html">ramanspy.preprocessing.baseline.FABC</a></li>
<li class="toctree-l2"><a class="reference internal" href="../generated/prepprocessing/norm/ramanspy.preprocessing.normalise.Vector.html">ramanspy.preprocessing.normalise.Vector</a></li>
<li class="toctree-l2"><a class="reference internal" href="../generated/prepprocessing/norm/ramanspy.preprocessing.normalise.MinMax.html">ramanspy.preprocessing.normalise.MinMax</a></li>
<li class="toctree-l2"><a class="reference internal" href="../generated/prepprocessing/norm/ramanspy.preprocessing.normalise.MaxIntensity.html">ramanspy.preprocessing.normalise.MaxIntensity</a></li>
<li class="toctree-l2"><a class="reference internal" href="../generated/prepprocessing/norm/ramanspy.preprocessing.normalise.AUC.html">ramanspy.preprocessing.normalise.AUC</a></li>
<li class="toctree-l2"><a class="reference internal" href="../generated/prepprocessing/protocols/ramanspy.preprocessing.protocols.georgiev2023_P1.html">ramanspy.preprocessing.protocols.georgiev2023_P1</a></li>
<li class="toctree-l2"><a class="reference internal" href="../generated/prepprocessing/protocols/ramanspy.preprocessing.protocols.georgiev2023_P3.html">ramanspy.preprocessing.protocols.georgiev2023_P3</a></li>
<li class="toctree-l2"><a class="reference internal" href="../generated/prepprocessing/protocols/ramanspy.preprocessing.protocols.georgiev2023_P3.html">ramanspy.preprocessing.protocols.georgiev2023_P3</a></li>
<li class="toctree-l2"><a class="reference internal" href="../generated/prepprocessing/protocols/ramanspy.preprocessing.protocols.bergholt2016.html">ramanspy.preprocessing.protocols.bergholt2016</a></li>
</ul>
</li>
<li class="toctree-l1 has-children"><a class="reference internal" href="../analysis.html">Analysis</a><input class="toctree-checkbox" id="toctree-checkbox-2" name="toctree-checkbox-2" role="switch" type="checkbox"/><label for="toctree-checkbox-2"><div class="visually-hidden">Toggle navigation of Analysis</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul>
<li class="toctree-l2"><a class="reference internal" href="../generated/analysis/decompose/ramanspy.analysis.decompose.PCA.html">ramanspy.analysis.decompose.PCA</a></li>
<li class="toctree-l2"><a class="reference internal" href="../generated/analysis/decompose/ramanspy.analysis.decompose.NMF.html">ramanspy.analysis.decompose.NMF</a></li>
<li class="toctree-l2"><a class="reference internal" href="../generated/analysis/decompose/ramanspy.analysis.decompose.ICA.html">ramanspy.analysis.decompose.ICA</a></li>
<li class="toctree-l2"><a class="reference internal" href="../generated/analysis/cluster/ramanspy.analysis.cluster.KMeans.html">ramanspy.analysis.cluster.KMeans</a></li>
<li class="toctree-l2"><a class="reference internal" href="../generated/analysis/unmix/ramanspy.analysis.unmix.PPI.html">ramanspy.analysis.unmix.PPI</a></li>
<li class="toctree-l2"><a class="reference internal" href="../generated/analysis/unmix/ramanspy.analysis.unmix.FIPPI.html">ramanspy.analysis.unmix.FIPPI</a></li>
<li class="toctree-l2"><a class="reference internal" href="../generated/analysis/unmix/ramanspy.analysis.unmix.NFINDR.html">ramanspy.analysis.unmix.NFINDR</a></li>
<li class="toctree-l2"><a class="reference internal" href="../generated/analysis/unmix/ramanspy.analysis.unmix.VCA.html">ramanspy.analysis.unmix.VCA</a></li>
</ul>
</li>
<li class="toctree-l1"><a class="reference internal" href="../synth.html">Synthetic data</a></li>
</ul>
<p class="caption" role="heading"><span class="caption-text">Gallery:</span></p>
<ul>
<li class="toctree-l1 has-children"><a class="reference internal" href="../auto_tutorials/index.html">Tutorials</a><input class="toctree-checkbox" id="toctree-checkbox-1" name="toctree-checkbox-1" role="switch" type="checkbox"/><label for="toctree-checkbox-1"><div class="visually-hidden">Toggle navigation of Tutorials</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul>
<li class="toctree-l1 has-children"><a class="reference internal" href="../auto_tutorials/index.html">Tutorials</a><input class="toctree-checkbox" id="toctree-checkbox-3" name="toctree-checkbox-3" role="switch" type="checkbox"/><label for="toctree-checkbox-3"><div class="visually-hidden">Toggle navigation of Tutorials</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul>
<li class="toctree-l2"><a class="reference internal" href="../auto_tutorials/i-classes/plot_i_generic_container.html">Storing generic data</a></li>
<li class="toctree-l2"><a class="reference internal" href="../auto_tutorials/i-classes/plot_ii_spectrum_container.html">Storing spectra</a></li>
<li class="toctree-l2"><a class="reference internal" href="../auto_tutorials/i-classes/plot_iii_image_container.html">Storing imaging data</a></li>
Expand Down Expand Up @@ -212,7 +254,7 @@
<li class="toctree-l2"><a class="reference internal" href="../auto_tutorials/vii-synth/plot_i_endmembers.html">Generate synthetic spectra</a></li>
</ul>
</li>
<li class="toctree-l1 has-children"><a class="reference internal" href="../auto_examples/index.html">Examples</a><input class="toctree-checkbox" id="toctree-checkbox-2" name="toctree-checkbox-2" role="switch" type="checkbox"/><label for="toctree-checkbox-2"><div class="visually-hidden">Toggle navigation of Examples</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul>
<li class="toctree-l1 has-children"><a class="reference internal" href="../auto_examples/index.html">Examples</a><input class="toctree-checkbox" id="toctree-checkbox-4" name="toctree-checkbox-4" role="switch" type="checkbox"/><label for="toctree-checkbox-4"><div class="visually-hidden">Toggle navigation of Examples</div><i class="icon"><svg><use href="#svg-arrow-right"></use></svg></i></label><ul>
<li class="toctree-l2"><a class="reference internal" href="../auto_examples/plot_i_package_overview.html">Cell phenotyping</a></li>
<li class="toctree-l2"><a class="reference internal" href="../auto_examples/plot_i_preprocessing_pipelines.html">Preprocessing pipelines</a></li>
<li class="toctree-l2"><a class="reference internal" href="../auto_examples/plot_ii_dl_denoising.html">AI-based denoising</a></li>
Expand Down Expand Up @@ -258,13 +300,22 @@
</div>
<article role="main">
<h1>All modules for which code is available</h1>
<ul><li><a href="ramanspy/core.html">ramanspy.core</a></li>
<ul><li><a href="ramanspy/analysis/cluster.html">ramanspy.analysis.cluster</a></li>
<li><a href="ramanspy/analysis/decompose.html">ramanspy.analysis.decompose</a></li>
<li><a href="ramanspy/analysis/unmix.html">ramanspy.analysis.unmix</a></li>
<li><a href="ramanspy/core.html">ramanspy.core</a></li>
<li><a href="ramanspy/datasets.html">ramanspy.datasets</a></li>
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