Formatting tweaks to LinearBurkeRate #3
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name: Post-merge Tests | |
on: | |
workflow_dispatch: # allow manual triggering of this workflow | |
inputs: | |
outgoing_ref: | |
description: "The ref to be built. Can be a tag, commit hash, or branch name" | |
required: true | |
default: "main" | |
push: | |
# Run when the main branch is pushed to | |
branches: | |
- main | |
# Run on pull requests when this file is modified | |
pull_request: | |
branches: | |
- main | |
paths: | |
- .github/workflows/post-merge-tests.yml | |
env: | |
PIP_EXTRA_INDEX_URL: https://pypi.anaconda.org/scientific-python-nightly-wheels/simple | |
PIP_ONLY_BINARY: ":all:" | |
jobs: | |
prerelease-cython: | |
name: Pre-release Cython | |
runs-on: ubuntu-22.04 | |
timeout-minutes: 60 | |
steps: | |
- uses: actions/checkout@v4 | |
name: Checkout the repository | |
with: | |
submodules: recursive | |
- name: Setup Python | |
uses: actions/setup-python@v5 | |
with: | |
python-version: 3.11 | |
architecture: x64 | |
- name: Install Apt dependencies | |
run: | | |
sudo apt update | |
sudo apt install libboost-dev libopenblas-dev libhdf5-dev | |
- name: Upgrade pip | |
run: python3 -m pip install -U pip setuptools wheel | |
- name: Install Python dependencies | |
run: | | |
python3 -m pip install ruamel.yaml scons numpy pandas pytest pint \ | |
pytest-xdist pytest-github-actions-annotate-failures graphviz | |
python3 -m pip install --pre cython | |
- name: Build Cantera | |
run: python3 `which scons` build env_vars=all | |
CXX=clang++-14 CC=clang-14 f90_interface=n extra_lib_dirs=/usr/lib/llvm/lib | |
-j4 debug=n --debug=time logging=debug python_package=y | |
- name: Build Tests | |
run: python3 `which scons` -j4 build-tests | |
- name: Run compiled tests | |
run: python3 `which scons` test-gtest test-legacy --debug=time | |
- name: Run Python tests | |
run: python3 -m pytest -raP -v -n auto --durations=50 test/python | |
env: | |
LD_LIBRARY_PATH: "${LD_LIBRARY_PATH}:build/lib" | |
PYTHONPATH: build/python | |
ubuntu-docker: | |
name: Docker 'ubuntu:${{ matrix.image }}' image | |
strategy: | |
matrix: | |
image: [devel, rolling] | |
fail-fast: false | |
runs-on: ubuntu-latest | |
timeout-minutes: 60 | |
container: | |
image: ubuntu:${{ matrix.image }} | |
steps: | |
- name: Install git on ubuntu:${{ matrix.image }} | |
run: | | |
apt update -y | |
apt install -y git | |
git config --global init.defaultBranch main | |
git config --global --add safe.directory /__w/cantera/cantera | |
- uses: actions/checkout@v4 | |
name: Checkout the repository | |
with: | |
submodules: recursive | |
- name: Install Apt dependencies | |
# Use packages from ubuntu image when possible | |
run: | | |
apt install -y python3 python3-pip pipenv scons build-essential \ | |
libboost-dev gfortran libopenmpi-dev libpython3-dev \ | |
libblas-dev liblapack-dev libhdf5-dev libfmt-dev libyaml-cpp-dev \ | |
libgtest-dev libgmock-dev libeigen3-dev libsundials-dev \ | |
cython3 python3-numpy python3-pandas python3-pint python3-graphviz \ | |
python3-ruamel.yaml python3-setuptools python3-wheel python3-pytest \ | |
python3-pytest-xdist | |
gcc --version | |
- name: Install Python dependencies | |
run: | | |
pipenv install pytest-github-actions-annotate-failures | |
- name: Build Cantera | |
run: | | |
scons build env_vars=all -j4 debug=n --debug=time \ | |
system_eigen=y system_fmt=y system_sundials=y system_yamlcpp=y \ | |
system_blas_lapack=y hdf_support=y f90_interface=y \ | |
cc_flags=-D_GLIBCXX_ASSERTIONS python_package=y | |
- name: Build Tests | |
run: scons -j4 build-tests | |
- name: Run compiled tests | |
run: scons test-gtest test-legacy --debug=time | |
- name: Run Python tests | |
run: python3 -m pytest -raP -v -n auto --durations=50 test/python | |
env: | |
LD_LIBRARY_PATH: "${LD_LIBRARY_PATH}:build/lib" | |
PYTHONPATH: build/python | |
fedora-docker: | |
name: Docker 'fedora:${{ matrix.image }}' image | |
strategy: | |
matrix: | |
image: [rawhide, latest] | |
fail-fast: false | |
runs-on: ubuntu-latest | |
timeout-minutes: 60 | |
container: | |
image: fedora:${{ matrix.image }} | |
steps: | |
- name: Install git on fedora:${{ matrix.image }} | |
run: | | |
dnf install -y git | |
git config --global init.defaultBranch main | |
git config --global --add safe.directory /__w/cantera/cantera | |
- uses: actions/checkout@v4 | |
name: Checkout the repository | |
- name: Install dependencies | |
# Use packages from Fedora | |
run: | | |
dnf install -y boost-devel eigen3-devel fmt-devel gcc gcc-c++ \ | |
gcc-fortran gmock-devel gtest-devel python3 python3-cython \ | |
python3-devel python3-numpy python3-pandas python3-pint python3-pip \ | |
python3-pytest python3-pytest-xdist python3-ruamel-yaml python3-scipy \ | |
python3-scons python3-wheel sundials-devel yaml-cpp-devel hdf5-devel \ | |
highfive-devel python3-graphviz python3-packaging | |
- name: Build Cantera | |
run: | | |
scons build -j4 debug=n --debug=time python_package=y f90_interface=y \ | |
extra_inc_dirs=/usr/include/eigen3 libdirname=/usr/lib64 \ | |
system_eigen=y system_fmt=y system_blas_lapack=y system_sundials=y \ | |
system_yamlcpp=y system_blas_lapack=y hdf_support=y | |
# note: 'system_highfive=y' is omitted as the current packaged version is too old; | |
# once newer version is available in 'latest', this should be tested as well | |
- name: Build Tests | |
run: scons -j4 build-tests | |
- name: Run compiled tests | |
run: scons test-gtest test-legacy --debug=time | |
- name: Run Python tests | |
run: python3 -m pytest -raP -v -n auto --durations=50 test/python | |
env: | |
LD_LIBRARY_PATH: build/lib | |
PYTHONPATH: build/python | |
ubuntu-python-prerelease: | |
name: ${{ matrix.os }} with Python ${{ matrix.python-version }} | |
runs-on: ${{ matrix.os }} | |
timeout-minutes: 60 | |
strategy: | |
matrix: | |
python-version: ['3.13'] | |
os: ['ubuntu-22.04', 'ubuntu-24.04'] | |
fail-fast: false | |
steps: | |
- uses: actions/checkout@v4 | |
name: Checkout the repository | |
with: | |
submodules: recursive | |
- name: Setup Python | |
uses: actions/setup-python@v5 | |
with: | |
python-version: ${{ matrix.python-version }} | |
architecture: x64 | |
allow-prereleases: true | |
- name: Install Apt dependencies | |
run: | | |
sudo apt update | |
sudo apt install libboost-dev gfortran libopenmpi-dev \ | |
libblas-dev liblapack-dev libhdf5-dev libfmt-dev | |
gcc --version | |
- name: Upgrade pip | |
run: python3 -m pip install -U pip setuptools wheel packaging | |
- name: Install Python dependencies | |
run: | | |
python3 -m pip install ruamel.yaml scons pytest \ | |
pytest-xdist pytest-github-actions-annotate-failures pint graphviz | |
python3 -m pip install --pre numpy cython pandas scipy | |
- name: Build Cantera | |
run: | | |
python3 `which scons` build env_vars=all -j4 debug=n --debug=time \ | |
system_fmt=y system_blas_lapack=y hdf_support=y cc_flags=-D_GLIBCXX_ASSERTIONS \ | |
python_package=y | |
- name: Build Tests | |
run: python3 `which scons` -j4 build-tests | |
- name: Run compiled tests | |
run: python3 `which scons` test-gtest test-legacy --debug=time | |
- name: Run Python tests | |
run: python3 -m pytest -raP -v -n auto --durations=50 test/python | |
env: | |
LD_LIBRARY_PATH: "${LD_LIBRARY_PATH}:build/lib" | |
PYTHONPATH: build/python | |
macos-homebrew: | |
runs-on: macos-14 | |
name: Install Latest Python with Homebrew | |
timeout-minutes: 90 | |
steps: | |
- uses: actions/checkout@v4 | |
name: Checkout the repository | |
with: | |
submodules: recursive | |
# NumPy is installed here for the Python custom rate tests | |
- name: Install Brew dependencies | |
run: brew install --display-times boost libomp hdf5 python numpy | |
- name: Set Include folder | |
run: echo "BOOST_INC_DIR=$(brew --prefix)/include" >> $GITHUB_ENV | |
# This is necessary because of PEP 668 https://peps.python.org/pep-0668/ | |
# PEP 668 prohibits installation to system Python packages via pip | |
- name: Create a virtualenv for dependencies | |
run: | | |
$(brew --prefix)/bin/python3.12 -m venv .venv | |
- name: Install Python dependencies | |
# SCons must be installed into the virtualenv because packaging is a dependency | |
# and we can't install packaging for the homebrew Python | |
run: | | |
./.venv/bin/python -m pip install -U pip setuptools wheel build | |
./.venv/bin/python -m pip install ruamel.yaml numpy cython pandas pytest \ | |
pytest-xdist pytest-github-actions-annotate-failures pint graphviz \ | |
scons packaging | |
- name: Build Cantera | |
run: ./.venv/bin/scons build env_vars=all -j3 debug=n --debug=time boost_inc_dir=${BOOST_INC_DIR} python_package=y | |
- name: Build Tests | |
run: ./.venv/bin/scons -j3 build-tests | |
- name: Run compiled tests | |
run: ./.venv/bin/scons test-gtest test-legacy --debug=time | |
- name: Run Python tests | |
run: ./.venv/bin/python -m pytest -raP -v -n auto --durations=50 test/python | |
env: | |
DYLD_LIBRARY_PATH: "${DYLD_LIBRARY_PATH}:build/lib" | |
PYTHONPATH: build/python |