Skip to content
View bakirillov's full-sized avatar
40 followers · 62 following

Achievements

Achievement: Pull SharkAchievement: Arctic Code Vault Contributor

Achievements

Achievement: Pull SharkAchievement: Arctic Code Vault Contributor

Block or report bakirillov

Block user

Prevent this user from interacting with your repositories and sending you notifications. Learn more about blocking users.

You must be logged in to block users.

Please don't include any personal information such as legal names or email addresses. Maximum 100 characters, markdown supported. This note will be visible to only you.
Report abuse

Contact GitHub support about this user’s behavior. Learn more about reporting abuse.

Report abuse
bakirillov/README.md

Hi there, I'm Bogdan A. Kirillov 👋

PhD in Life Sciences, Machine Learning Developer.

  • 🔭 I’m currently working on several Computational Biology projects
  • 🌱 I’m currently learning how to model a living system with PDEs
  • 💬 Ask me about how to build a Machine Learning-powered MVP for your startup
  • ⚡ Fun fact: cat gifs are the ultimate drug

Contacts and links:

bakirillov | Telegram bakirillov | Scholar



PhD thesis:

Uncertainty quantification and neural network interpretation for studying CRISPR mechanics: 10.13140/RG.2.2.15498.85448

Latest papers:

Measuring internal inequality in capsule networks for supervised anomaly detection: https://doi.org/10.1038/s41598-022-17734-7

Uncertainty-aware and interpretable evaluation of Cas9–gRNA and Cas12a–gRNA specificity for fully matched and partially mismatched targets with Deep Kernel Learning: https://academic.oup.com/nar/article/50/2/e11/6430490

Examining the effects of transcranial direct current stimulation on human episodic memory with machine learning: https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0235179 (preprint: https://www.biorxiv.org/content/10.1101/2020.06.11.145805v1)



bakirillov's Github Stats

Pinned Loading

  1. awesome-underinvestigated-biology awesome-underinvestigated-biology Public

    Topics in biology that are not researched as much as they should be

    15 2

  2. capsule_ad capsule_ad Public

    Code for the reproduction of "Measuring Internal Inequality in Capsule Networks for Supervised Anomaly Detection"

    Jupyter Notebook

  3. uace uace Public

    Source code for https://academic.oup.com/nar/advance-article/doi/10.1093/nar/gkab1065/6430490

    Jupyter Notebook 2 1

  4. episodic-memory-ml episodic-memory-ml Public

    Sources for "Examining the effects of transcranial direct current stimulation on human episodic memory with machine learning"

    Jupyter Notebook 1

  5. neurovalidation neurovalidation Public

    Code for NN-based construct validity evaluation paper in DTGS'18

    Jupyter Notebook 1

  6. capsules capsules Public

    My implementation of capsule network with dynamic routing

    Jupyter Notebook 5 3