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bahanonu committed May 2, 2024
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2 changes: 1 addition & 1 deletion all_docs/index.html
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<p>Spatial filtering can have a large impact on the resulting cell activity traces extracted from the movies and can lead to erroneous conclusions if not properly applied during pre-processing.</p>
<p>For example, below are the correlations between all cell-extraction outputs from PCA-ICA, ROI back-application of ICA filters, and CNMF-e on a miniature microscope one-photon movie. As can be seen, especially in the case of ROI analysis, the correlation between the activity traces is rendered artificially high due to the correlated background noise. This is greatly reduced in many instances after proper spatial filtering.</p>
<p><img alt="image" src="https://user-images.githubusercontent.com/5241605/111710928-e864c980-8807-11eb-9d29-81341290d108.png"/></p>
<p>(Chebychev clustering, n = 5 clusters)</p>
<!-- (Chebychev clustering, n = 5 clusters) -->
<!-- <hr> -->
<h3 id="filtering-movies-with-normalizemovie">Filtering movies with <code>normalizeMovie</code><a class="headerlink" href="#filtering-movies-with-normalizemovie" title="Permanent link"></a></h3>
<p>Users can quickly filter movies using the <code>normalizeMovie</code> function. See below for usage.</p>
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3 changes: 2 additions & 1 deletion help_spatial_filtering/index.html
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Expand Up @@ -247,7 +247,8 @@ <h2 id="why-conduct-spatial-filtering">Why conduct spatial filtering?<a class="h
<p>Spatial filtering can have a large impact on the resulting cell activity traces extracted from the movies and can lead to erroneous conclusions if not properly applied during pre-processing.</p>
<p>For example, below are the correlations between all cell-extraction outputs from PCA-ICA, ROI back-application of ICA filters, and CNMF-e on a miniature microscope one-photon movie. As can be seen, especially in the case of ROI analysis, the correlation between the activity traces is rendered artificially high due to the correlated background noise. This is greatly reduced in many instances after proper spatial filtering.</p>
<p><img alt="image" src="https://user-images.githubusercontent.com/5241605/111710928-e864c980-8807-11eb-9d29-81341290d108.png" /></p>
<p>(Chebychev clustering, n = 5 clusters)</p>
<!-- (Chebychev clustering, n = 5 clusters) -->

<!-- <hr> -->

<h2 id="filtering-movies-with-normalizemovie">Filtering movies with <code>normalizeMovie</code><a class="headerlink" href="#filtering-movies-with-normalizemovie" title="Permanent link">&para;</a></h2>
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2 changes: 1 addition & 1 deletion index.html
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Expand Up @@ -404,5 +404,5 @@ <h2 id="repository-stats">Repository stats<a class="headerlink" href="#repositor

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MkDocs version : 1.1.2
Build Date UTC : 2024-05-02 00:11:37.941671+00:00
Build Date UTC : 2024-05-02 00:14:33.315989+00:00
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