Updates to make torchcfm pip installable

.gitignore

@@ -171,3 +171,5 @@ slurm*.out
 *.jpg
 
 notebooks/figures/
+
+.DS_Store

requirements.txt

@@ -8,9 +8,8 @@ scipy
 scikit-learn
 scprep
 scanpy
-timm
 torchdyn>=1.0.7   # 1.0.4 is broken on pypi
 pot
-torchdiffeq==0.2.3
+torchdiffeq
 absl-py
 clean-fid

setup.py

@@ -4,15 +4,36 @@
 
 from setuptools import find_packages, setup
 
+install_requires = [
+    "torch>=1.11.0",
+    "torchvision>=0.11.0",
+    "lightning-bolts",
+    "matplotlib",
+    "numpy",
+    "scipy",
+    "scikit-learn",
+    "scprep",
+    "scanpy",
+    "torchdyn",
+    "pot",
+    "torchdiffeq",
+    "absl-py",
+    "clean-fid",
+]
+
 version_py = os.path.join(os.path.dirname(__file__), "torchcfm", "version.py")
 version = open(version_py).read().strip().split("=")[-1].replace('"', "").strip()
+readme = open("README.md").read()
 setup(
     name="torchcfm",
     version=version,
     description="Conditional Flow Matching for Fast Continuous Normalizing Flow Training.",
-    author="Alexander Tong",
+    author="Alexander Tong, Kilian Fatras",
     author_email="[email protected]",
     url="https://github.com/atong01/conditional-flow-matching",
-    install_requires=["torch", "pot", "numpy", "torchdyn"],
+    install_requires=install_requires,
+    license="MIT",
+    long_description=readme,
+    long_description_content_type="text/markdown",
     packages=find_packages(),
 )