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Remove requiring the first value of input recombination probability array be zero #138

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Jun 24, 2024
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Remove requiring the first value of input recombination probability array be zero #138

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9 changes: 3 additions & 6 deletions lshmm/api.py
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Original file line number Diff line number Diff line change
Expand Up @@ -108,12 +108,9 @@ def check_inputs(
if isinstance(prob_recombination, (int, float)):
prob_recombination = np.zeros(num_sites, dtype=np.float64) + prob_recombination
prob_recombination[0] = 0.0
elif (
isinstance(prob_recombination, np.ndarray)
and len(prob_recombination) == num_sites
):
if prob_recombination[0] != 0:
err_msg = "First value in the recombination probability array must be zero."
elif isinstance(prob_recombination, np.ndarray):
if len(prob_recombination) != num_sites:
err_msg = "Recombination probability is an array of unexpected length."
raise ValueError(err_msg)
else:
err_msg = (
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