JGI Plant Gene Atlas: An updateable transcriptome resource to improve functional gene descriptions across the plant kingdom

Custom scripts used in the analysis for JGI Plant Gene Atlas resource are available.

The manuscript is currently available here https://www.biorxiv.org/content/10.1101/2022.09.30.510380v1.

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Analyses

Input files

All genome reference assemblies and annotation files were downloaded from Phytozome (https://phytozome-next.jgi.doe.gov/)

RNA-seq data is available at NCBI SRA.

Scripts used

• Functions utilities used in categorization of gene function descriptions
• Categorize function descriptions of all Gene Atlas species