yaml with multiple controls

[jsacco1]

Hi all, how do I create a yaml manifest with multiple controls (specifically, one for the M samples, and one for the P samples), and how would the filtering step know which to use for each sample?

I cannot label a control anything other than "control" in the yaml. I get this error:

[ERROR][validation] A control sample must be specified

Any sample labeled "control_b" or "control_P" just seems to be ignored when generating the "consolidated", "identify", and "visualization" files.

Thank you,

James

[martinaryee]

You’d unfortunately need to make 2 separate manifests since the pipeline currently only allows 1 control per manifest. Hopefully that will work for your scenario? Martin.

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On Aug 27, 2021, at 3:47 PM, James Sacco ***@***.***> wrote: Hi all, how do I create a yaml manifest with multiple controls (specifically, one for the M samples, and one for the P samples), and how would the filtering step know which to use for each sample? I cannot label a control anything other than "control" in the yaml. I get this error: [ERROR][validation] A control sample must be specified Any sample labeled "control_b" or "control_P" just seems to be ignored when generating the "consolidated", "identify", and "visualization" files. Thank you, James — You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub <#65>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AAN6BQYUTM4R43R7PYQYM53T67TVBANCNFSM5C6FUI2Q>.

[jsacco1]

Hi Martin,

Thank you for your quick reply! Two manifests will work for me.

Best,

James