#angsd-wrapper

Update: The current version of ANGSD-wrapper is available at: https://github.com/mojaveazure/angsd-wrapper

This version is now deprecated.

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Wrapper scripts and documentation to make angsd easier to use.

Installation

In order to install angsd-wrapper fully, you need to follow a few steps:

First, you need to make the ANGSD executable and the associated programs by copying this in your command line:

git clone https://github.com/arundurvasula/angsd-wrapper.git
cd angsd-wrapper/angsd
make
cd ../ngsPopGen
make
cd ../ngsF
make

Then you need to install the requisite R packages for using the R graphing application:

R
install.packages("shiny")
install.packages("ape")
install.packages("Hmisc")
install.packages("lattice")
source("http://bioconductor.org/biocLite.R")
biocLite("genomeIntervals")
install.packages("data.table")

Documentation available on the wiki.

Contributing

Contributions are very welcome! You can help by submitting issues on Github or by forking the repository and making changes yourself.