WIP: Adds an initial Github Actions config for test suite.

.github/workflows/docbuild.yml

@@ -0,0 +1,36 @@
+name: Documentation build
+
+on: [push, pull_request]
+
+jobs:
+  build:
+    runs-on: ubuntu-latest
+    steps:
+    - name: Checkout repo
+      uses: actions/checkout@v1
+    - name: Set up Python 3.7
+      uses: actions/setup-python@v1
+      with:
+        python-version: '3.7'
+    - name: Install software
+      run: |
+        pip install .[all]
+    - name: Build docs
+      run: |
+        make -C docs html
+    - name: Upload docs
+      uses: actions/upload-artifact@v1
+      with:
+        name: docs
+        path: docs/_build/html
+    - name: Create versioned docs on tag
+      if: startsWith(github.event.ref, 'refs/tags')
+      run: |
+        make -f ./docs/Makefile versioned CURBRANCH=${GITHUB_REF##*/}
+    - name: Publish docs to Github Pages
+      if: startsWith(github.event.ref, 'refs/tags')
+      uses: JamesIves/github-pages-deploy-action@releases/v3
+      with:
+        ACCESS_TOKEN: ${{ secrets.DOCDEPLOY_ACCESS_TOKEN }}
+        BRANCH: gh-pages # The branch the action should deploy to.
+        FOLDER: docs/_build/html # The folder the action should deploy.

.github/workflows/docker.yml

@@ -0,0 +1,37 @@
+name: Docker
+on: [push, pull_request]
+jobs:
+  build:
+    runs-on: ubuntu-latest
+    steps:
+    - name: Checkout repo
+      uses: actions/checkout@v1
+    - name: Set up Python 3.7
+      uses: actions/setup-python@v1
+      with:
+        python-version: '3.7'
+    - name: Build docker image
+      run: |
+            # Get version, update files.
+            THISVERSION=$( python get_version.py )
+            if [[ ${THISVERSION:0:2} == "0+" ]] ; then
+              echo "WARNING: latest git tag could not be found"
+              echo "Please, make sure you fetch all tags from upstream with"
+              echo "the command ``git fetch --tags --verbose`` and push"
+              echo "them to your fork with ``git push origin --tags``"
+            fi
+            # Build docker image
+            e=1 && for i in {1..5}; do
+              docker build --rm \
+                -t nipreps/dmriprep:latest \
+                --build-arg BUILD_DATE=`date -u +"%Y-%m-%dT%H:%M:%SZ"` \
+                --build-arg VCS_REF=`git rev-parse --short HEAD` \
+                --build-arg VERSION="${CIRCLE_TAG:-$THISVERSION}" . \
+              && e=0 && break || sleep 15
+            done && [ "$e" -eq "0" ]
+    - name: Push docker image
+      if: startsWith(github.event.ref, 'refs/tags') || startsWith(github.event.ref, 'docker/') || github.event.pull_request.merged == true
+      run: |
+        docker login -u ${{ secrets.DOCKER_USERNAME }} -p ${{ secrets.DOCKER_PASSWORD }}
+        docker tag nipreps/dmriprep nipreps/dmriprep:${{ github.sha }}
+        docker push nipreps/dmriprep:$${{ github.sha }}

.github/workflows/test.yml

@@ -0,0 +1,26 @@
+name: Test suite
+
+on: [push, pull_request]
+
+jobs:
+  build:
+
+    runs-on: ubuntu-latest
+    strategy:
+      max-parallel: 4
+      matrix:
+        python-version: [3.6, 3.7]
+
+    steps:
+    - name: Checkout repo
+      uses: actions/checkout@v1
+    - name: Set up Python ${{ matrix.python-version }}
+      uses: actions/setup-python@v1
+      with:
+        python-version: ${{ matrix.python-version }}
+    - name: Install software
+      run: |
+        pip install .[all]
+    - name: Test
+      run: |
+        pytest dmriprep

setup.cfg

@@ -109,7 +109,7 @@ putty-ignore =
 
 [tool:pytest]
 norecursedirs = .* _*
-addopts = -vx --doctest-modules
+addopts = -n 2 -vv --doctest-modules --cov dmriprep --cov-config .coveragerc --cov-report xml:cov.xml
 doctest_optionflags = ALLOW_UNICODE NORMALIZE_WHITESPACE
 env =
     PYTHONHASHSEED=0