Update README.md

README.md

@@ -29,7 +29,7 @@ As a rule of thumb, the `-peak` should be:
 Optionally, a custom lookup table of kmer multiplicities with fitted copy numbers and probabilities can be provided (`-lookup`). The lookup table is generated when running our modified version of [Genomescope 2.0](https://github.com/gf777/genomescope2.0). This is recommended, and can significantly improve the accuracy of all analyses:
 
 ```
-Rscript genomescope.R <kmer_histogram> <k_size> <output_folder> --fitted_hist [ploidy] [verbose]
+Rscript genomescope.R -h <kmer_histogram>  -k <k_size> -o <output_folder> --fitted_hist [ploidy] [verbose]
 kmer_histogram  tab-delimited, 2-column file with (same as for Genomescope2, usually generated by meryl hist, or jellyfish)
 k_size          kmer length used for the histogram
 ploidy          haploid/diploid (default = 2)