update utility · arangrhie/merfin@02c0024

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update utility

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arangrhie committed Jun 9, 2021

1 parent f6a9793 commit 02c0024

+49 −0		README.licenses
+4 −0		src/main.mk
+167 −0		src/tests/fasta-fastq.C
+8 −0		src/tests/fasta-fastq.mk
+191 −13		src/tests/stringsTest.C
+8 −0		src/tests/stringsTest.mk
+219 −0		src/tests/toHexTest.C
+8 −0		src/tests/toHexTest.mk
+33 −0		src/tests/typesTest.C
+4 −0		src/utility/bits-wordArray.C
+3 −1		src/utility/bits.H
+1 −1		src/utility/edlib.C
+1 −1		src/utility/edlib.H
+267 −0		src/utility/files-fasta-fastq.C
+84 −0		src/utility/files-fasta-fastq.H
+0 −137		src/utility/files.C
+1 −37		src/utility/files.H
+36 −5		src/utility/kmers-exact.C
+2 −4		src/utility/kmers-lookup.H
+42 −0		src/utility/sequence.C
+8 −11		src/utility/sequence.H
+10 −4		src/utility/strings.C
+0 −4		src/utility/system-stackTrace.C
+35 −17		src/utility/system.C
+17 −21		src/utility/types.C
+1 −1		src/utility/types.H