This github repository contains a pipeline to interface with SPM12's segmentation and DARTEL tools in Octave and can be deployed on a high performance cluster.
This package depends on the NeuroImaging Analysis Kit (NIAK) version 0.18.1, which can be installed through a docker container. More information about the NIAK installation can be found here.
This package also depends on SPM12. Visit the SPM website for more info on their software and installation.
Authors: Angela Tam, Yasser Iturria-Medina, Pierre Bellec
- generating a new template is broken (i.e. pipeline will work if you provide a template and normalize new subjects to it)
Please note that this repository is not under active maintenance at the moment.