- Added issues folder

- Added John Reid as contributor
- Added fix in SREutils.R Sm@S0 <- Sm@S0[needed_BAUs,]
- Fixed NOAA dataset source and reference
- Added variable boundary buffer to convex hull construction
- Now referring all C files to LICENSE.note instead of README.txt

.Rbuildignore

@@ -7,6 +7,7 @@ bigstudies
 ^\.\.Rcheck$
 ^\.git$
 ^inla-mesher-functions
+^issues
 ^PBSmapping
 ^R/rhipe_fns.R$
 .log$
@@ -22,5 +23,4 @@ bigstudies
 ^vignettes/figures
 rhipe_fns.R$
 ^Permissions
-^pres
-.Rnw$
+^pres

.gitignore

@@ -14,6 +14,7 @@ src/*.so
 FRK.Rcheck
 *.tar.gz
 inla-mesher-functions
+issues
 PBSmapping
 paper
 vignettes/cache

DESCRIPTION

@@ -7,7 +7,8 @@ Authors@R: c(
     person("Andrew", "Zammit-Mangion", , "[email protected]", c("aut", "cre")),
     person("Timothy", "Davis", , "[email protected]", role = "ctb"),
     person("Patrick","Amestoy", ,"[email protected]", role = "ctb"),
-    person("Iain","Duff", ,"[email protected]", role = "ctb"))
+    person("Iain","Duff", ,"[email protected]", role = "ctb"),
+	person("John K.","Reid", ,"[email protected]", role = "ctb"))
 Maintainer: Andrew Zammit-Mangion <[email protected]>
 VignetteBuilder: knitr
 Description: Fixed Rank Kriging is a tool for spatial/spatio-temporal modelling

LICENSE.note

@@ -71,7 +71,7 @@ SuiteSparse_config.h is from SuiteSparse. The file contains the following licens
 
 
 
-sparseinv* are taken from the sparseinv package in SuiteSparse. Since sparseinv is posted at MATLAB Central, it falls under the BSD liense. The BSD license is the following
+sparseinv* are taken from the sparseinv package in SuiteSparse. Since sparseinv is posted at MATLAB Central, it falls under the BSD license. The BSD license is the following
 
     Copyright (c)   Copyright 2011, Timothy A. Davis, University of Florida
     All rights reserved.

R/SREutils.R

@@ -959,6 +959,7 @@ SRE.predict <- function(SRE_model,obs_fs=FALSE,pred_polys = NULL,pred_time = NUL
         BAUs <- BAUs[needed_BAUs,]
         CP <- CP[,needed_BAUs]
         CZ <- CZ[,needed_BAUs]
+        Sm@S0 <- Sm@S0[needed_BAUs,]
     }
 
     # Deprecated:

R/datadoc.R

@@ -18,7 +18,7 @@
 
 #' @title NOAA maximum temperature data for 1990-1993
 #'
-#' @description Maximum temperature data obtained from the National Oceanic and Atmospheric Administration (NOAA) for a part of the USA between 1990 and 1993 (inclusive).
+#' @description Maximum temperature data obtained from the National Oceanic and Atmospheric Administration (NOAA) for a part of the USA between 1990 and 1993 (inclusive). See http://iridl.ldeo.columbia.edu/SOURCES/.NOAA/.NCDC/.DAILY/.FSOD/.
 #'
 #' @format A data frame with 196253 rows and 8 variables:
 #' \describe{
@@ -32,7 +32,7 @@
 #'   \item{lat}{latitude coordinate of retrieval}
 #' }
 #' @docType data
-#' @references  Chahine, M. et al. (2006). AIRS: Improving weather forecasting and providing new data on greenhouse gases. Bulletin of the American Meteorological Society 87, 911--26.
+#' @references  National Climatic Data Center, March 1993: Local Climatological Data. Environmental Information summary (C-2), NOAA-NCDC, Asheville, NC.
 "NOAA_df_1990"
 
 #' @title ISEA Aperture 3 Hexagon (ISEA3H) Discrete Global Grid

R/geometryfns.R

@@ -1476,8 +1476,8 @@ as.SpatialPolygons.GridTopology2 <- function (grd, proj4string = CRS(as.characte
         # expand convex hull out
         bndary_seg <- conv_hull
         delta <- max(apply(bound_box,1,function(x) diff(range(x))))
-        bndary_seg[,1] <- conv_hull[,1] + sign(conv_hull[,1] - centroid[1])*delta/5
-        bndary_seg[,2] <- conv_hull[,2] + sign(conv_hull[,2] - centroid[2])*delta/5
+        bndary_seg[,1] <- conv_hull[,1] + sign(conv_hull[,1] - centroid[1])*delta*(-convex)
+        bndary_seg[,2] <- conv_hull[,2] + sign(conv_hull[,2] - centroid[2])*delta*(-convex)
         #bndary_seg[,1] <- centroid[1] + (conv_hull[,1] - centroid[1])*2
         #bndary_seg[,2] <- centroid[2] + (conv_hull[,2] - centroid[2])*2
         colnames(bndary_seg) <- NULL

src/amd.h

@@ -4,7 +4,7 @@
 
 /* ------------------------------------------------------------------------- */
 /* AMD Version 2.2, Copyright (c) 2007 by Timothy A. Davis,                  */
-/* Patrick R. Amestoy, and Iain S. Duff.  See ../README.txt for License.     */
+/* Patrick R. Amestoy, and Iain S. Duff.  See ../LICENSE.note for License.     */
 /* email: [email protected]                                      */
 /* ------------------------------------------------------------------------- */
 

src/amd_1.c

@@ -4,7 +4,7 @@
 
 /* ------------------------------------------------------------------------- */
 /* AMD, Copyright (c) Timothy A. Davis,					     */
-/* Patrick R. Amestoy, and Iain S. Duff.  See ../README.txt for License.     */
+/* Patrick R. Amestoy, and Iain S. Duff.  See ../LICENSE.note for License.     */
 /* email: [email protected]                                      */
 /* ------------------------------------------------------------------------- */
 

src/amd_2.c

@@ -4,7 +4,7 @@
 
 /* ------------------------------------------------------------------------- */
 /* AMD, Copyright (c) Timothy A. Davis,					     */
-/* Patrick R. Amestoy, and Iain S. Duff.  See ../README.txt for License.     */
+/* Patrick R. Amestoy, and Iain S. Duff.  See ../LICENSE.note for License.     */
 /* email: [email protected]                                      */
 /* ------------------------------------------------------------------------- */
 

src/amd_aat.c

@@ -4,7 +4,7 @@
 
 /* ------------------------------------------------------------------------- */
 /* AMD, Copyright (c) Timothy A. Davis,					     */
-/* Patrick R. Amestoy, and Iain S. Duff.  See ../README.txt for License.     */
+/* Patrick R. Amestoy, and Iain S. Duff.  See ../LICENSE.note for License.     */
 /* email: [email protected]                                      */
 /* ------------------------------------------------------------------------- */
 

src/amd_control.c

@@ -4,7 +4,7 @@
 
 /* ------------------------------------------------------------------------- */
 /* AMD, Copyright (c) Timothy A. Davis,					     */
-/* Patrick R. Amestoy, and Iain S. Duff.  See ../README.txt for License.     */
+/* Patrick R. Amestoy, and Iain S. Duff.  See ../LICENSE.note for License.     */
 /* email: [email protected]                                      */
 /* ------------------------------------------------------------------------- */
 

src/amd_defaults.c

@@ -4,7 +4,7 @@
 
 /* ------------------------------------------------------------------------- */
 /* AMD, Copyright (c) Timothy A. Davis,					     */
-/* Patrick R. Amestoy, and Iain S. Duff.  See ../README.txt for License.     */
+/* Patrick R. Amestoy, and Iain S. Duff.  See ../LICENSE.note for License.     */
 /* email: [email protected]                                      */
 /* ------------------------------------------------------------------------- */
 

src/amd_dump.c

@@ -4,7 +4,7 @@
 
 /* ------------------------------------------------------------------------- */
 /* AMD, Copyright (c) Timothy A. Davis,					     */
-/* Patrick R. Amestoy, and Iain S. Duff.  See ../README.txt for License.     */
+/* Patrick R. Amestoy, and Iain S. Duff.  See ../LICENSE.note for License.     */
 /* email: [email protected]                                      */
 /* ------------------------------------------------------------------------- */
 

src/amd_global.c

@@ -4,7 +4,7 @@
 
 /* ------------------------------------------------------------------------- */
 /* AMD, Copyright (c) Timothy A. Davis,					     */
-/* Patrick R. Amestoy, and Iain S. Duff.  See ../README.txt for License.     */
+/* Patrick R. Amestoy, and Iain S. Duff.  See ../LICENSE.note for License.     */
 /* email: [email protected]                                      */
 /* ------------------------------------------------------------------------- */
 

src/amd_info.c

@@ -4,7 +4,7 @@
 
 /* ------------------------------------------------------------------------- */
 /* AMD, Copyright (c) Timothy A. Davis,					     */
-/* Patrick R. Amestoy, and Iain S. Duff.  See ../README.txt for License.     */
+/* Patrick R. Amestoy, and Iain S. Duff.  See ../LICENSE.note for License.     */
 /* email: [email protected]                                      */
 /* ------------------------------------------------------------------------- */
 

src/amd_internal.h

@@ -4,7 +4,7 @@
 
 /* ------------------------------------------------------------------------- */
 /* AMD, Copyright (c) Timothy A. Davis,                                      */
-/* Patrick R. Amestoy, and Iain S. Duff.  See ../README.txt for License.     */
+/* Patrick R. Amestoy, and Iain S. Duff.  See ../LICENSE.note for License.     */
 /* email: [email protected]                                      */
 /* ------------------------------------------------------------------------- */
 

src/amd_order.c

@@ -4,7 +4,7 @@
 
 /* ------------------------------------------------------------------------- */
 /* AMD, Copyright (c) Timothy A. Davis,					     */
-/* Patrick R. Amestoy, and Iain S. Duff.  See ../README.txt for License.     */
+/* Patrick R. Amestoy, and Iain S. Duff.  See ../LICENSE.note for License.     */
 /* email: [email protected]                                      */
 /* ------------------------------------------------------------------------- */
 

src/amd_post_tree.c

@@ -4,7 +4,7 @@
 
 /* ------------------------------------------------------------------------- */
 /* AMD, Copyright (c) Timothy A. Davis,					     */
-/* Patrick R. Amestoy, and Iain S. Duff.  See ../README.txt for License.     */
+/* Patrick R. Amestoy, and Iain S. Duff.  See ../LICENSE.note for License.     */
 /* email: [email protected]                                      */
 /* ------------------------------------------------------------------------- */
 

src/amd_postorder.c

@@ -4,7 +4,7 @@
 
 /* ------------------------------------------------------------------------- */
 /* AMD, Copyright (c) Timothy A. Davis,					     */
-/* Patrick R. Amestoy, and Iain S. Duff.  See ../README.txt for License.     */
+/* Patrick R. Amestoy, and Iain S. Duff.  See ../LICENSE.note for License.     */
 /* email: [email protected]                                      */
 /* ------------------------------------------------------------------------- */
 

src/amd_preprocess.c

@@ -4,7 +4,7 @@
 
 /* ------------------------------------------------------------------------- */
 /* AMD, Copyright (c) Timothy A. Davis,					     */
-/* Patrick R. Amestoy, and Iain S. Duff.  See ../README.txt for License.     */
+/* Patrick R. Amestoy, and Iain S. Duff.  See ../LICENSE.note for License.     */
 /* email: [email protected]                                      */
 /* ------------------------------------------------------------------------- */
 

src/amd_valid.c

@@ -4,7 +4,7 @@
 
 /* ------------------------------------------------------------------------- */
 /* AMD, Copyright (c) Timothy A. Davis,					     */
-/* Patrick R. Amestoy, and Iain S. Duff.  See ../README.txt for License.     */
+/* Patrick R. Amestoy, and Iain S. Duff.  See ../LICENSE.note for License.     */
 /* email: [email protected]                                      */
 /* ------------------------------------------------------------------------- */