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2024-08-19_17-41-04_240819_ENC_PL_SB_WW_cumulative_since_2024-07-29_sandiego #204

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2024-08-19_17-41-04_240819_ENC_PL_SB_WW_cumulative_since_2024-07-29_sandiego #204

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7c5863d
240801_SG_WW
Aug 5, 2024
79bd872
growth rate calc
CviewMachineAcct Aug 5, 2024
19fa446
2024-08-05_16-21-37_240805_ENC_PL_SB_WW_cumulative_since_2024-07-15_s…
CviewMachineAcct Aug 5, 2024
8fb2faa
2024-08-13_01-15-33_240812_ENC_PL_SB_WW_cumulative_since_2024-07-29_s…
CviewMachineAcct Aug 13, 2024
2f94b3f
2024-08-19_17-41-04_240819_ENC_PL_SB_WW_cumulative_since_2024-07-29_s…
CviewMachineAcct Aug 20, 2024
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5 changes: 5 additions & 0 deletions Encina_sewage_qPCR.csv
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Original file line number Diff line number Diff line change
Expand Up @@ -504,3 +504,8 @@ Sample_Date,Mean viral gene copies/L
08/02/24,4238903
08/06/24,5162689
08/09/24,6024119
08/12/24,2879764
08/13/24,4140247
08/14/24,4842005
08/15/24,4131905
08/16/24,6824721
229 changes: 229 additions & 0 deletions Encina_sewage_seqs.csv
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4 changes: 4 additions & 0 deletions PointLoma_sewage_qPCR.csv
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Expand Up @@ -597,3 +597,7 @@ Sample_Date,Mean viral gene copies/L
08/05/24,10952724
08/06/24,13085052
08/07/24,9558193
08/11/24,8993606
08/12/24,6876436
08/13/24,11078072
08/14/24,5400754
482 changes: 482 additions & 0 deletions PointLoma_sewage_seqs.csv
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2 changes: 2 additions & 0 deletions SouthBay_sewage_qPCR.csv
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Expand Up @@ -315,3 +315,5 @@ Sample_Date,Mean viral gene copies/L
08/06/24,1661929
08/08/24,2438691
08/11/24,2494514
08/13/24,1288945
08/15/24,1778872
211 changes: 211 additions & 0 deletions SouthBay_sewage_seqs.csv
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16 changes: 16 additions & 0 deletions rel_growth_rates.csv
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Original file line number Diff line number Diff line change
@@ -1,6 +1,22 @@
Lineage,Estimated Advantage,Bootstrap 95% interval
<<<<<<< HEAD
<<<<<<< HEAD
KP.3.1.1.X,12.3%,"[0.45% , 32.57%]"
KP.3.X,4.5%,"[-1.32% , 9.97%]"
KP.2.X,1.6%,"[-3.97% , 6.98%]"
KP.1.1.X,-3.1%,"[-53.80% , 5.96%]"
JN.1.X,-6.3%,"[-11.63% , 0.34%]"
=======
KP.3.1.1.X,15.1%,"[-2.56% , 38.49%]"
KP.2.X,4.1%,"[-2.74% , 13.56%]"
KP.3.X,-2.6%,"[-8.57% , 3.60%]"
KP.1.1.X,-3.0%,"[-8.33% , 1.66%]"
JN.1.X,-4.1%,"[-8.63% , 0.62%]"
>>>>>>> andersen_wastewater/master
=======
KP.3.1.1.X,11.4%,"[6.76% , 17.98%]"
KP.2.X,5.0%,"[0.38% , 11.38%]"
KP.3.X,-3.8%,"[-8.06% , -0.72%]"
JN.1.X,-6.6%,"[-11.69% , -2.49%]"
KP.1.1.X,-11.3%,"[-31.33% , -1.47%]"
>>>>>>> andersen_wastewater/master
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