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Merge pull request #141 from AmandaBirmingham/master
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231027_WW
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@joshuailevy
joshuailevy authored Oct 30, 2023
2 parents 157d6f3 + 9bc0ec7 commit a031c48
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Showing 4 changed files with 18 additions and 0 deletions.
4 changes: 4 additions & 0 deletions Encina_sewage_seqs.csv
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Expand Up @@ -134,3 +134,7 @@ Date,Omicron,Delta,Alpha,BA.1,BA.1.1.X,BA.2.X,BA.2.12.X,BA.4.X,BA.5.X,BA.2.75,BA
10/02/23,93.9,0.0,0,0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,2.5,16.9,0.4,24.4,16.6,3.7,26.9,2.0,1.0
10/05/23,89.8,0.0,0,0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,1.2,2.2,1.1,7.8,68.2,0.3,8.5,0.0,1.5
10/09/23,88.6,0.0,0,0,0.0,0.1,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,2.3,7.0,5.2,25.8,11.6,0.0,40.6,0.0,1.0
10/13/23,94.7,0.0,0,0,0.0,0.2,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.4,0.2,0.1,1.0,0.3,0.1,4.2,88.4,0.0
10/16/23,88.6,0.0,0,0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,1.8,0.5,5.2,42.2,10.1,5.3,27.5,0.0,1.2
10/19/23,86.3,0.0,0,0,0.0,0.4,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,1.1,5.5,6.3,17.9,3.1,4.5,43.0,1.7,9.0
10/20/23,93.2,0.0,0,0,0.0,3.2,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.4,1.4,0.2,21.1,10.5,0.0,40.7,0.0,15.9
2 changes: 2 additions & 0 deletions PointLoma_sewage_qPCR.csv
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Expand Up @@ -440,3 +440,5 @@ Sample_Date,Mean viral gene copies/L
10/18/23,6684121
10/22/23,5616713
10/23/23,5639413
10/24/23,7010499
10/25/23,7816586
8 changes: 8 additions & 0 deletions PointLoma_sewage_seqs.csv
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Expand Up @@ -313,3 +313,11 @@ Date,Omicron,Delta,Alpha,BA.1,BA.1.1.X,BA.2.X,BA.2.12.X,BA.4.X,BA.5.X,B.1.1.529,
10/09/23,86.5,0.0,0.0,0.0,0.0,0.6,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,2.9,0.0,5.7,10.3,15.8,12.3,2.8,21.1,0.1,17.7
10/10/23,88.4,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,1.5,0.0,0.8,13.8,22.1,19.1,3.3,19.1,0.0,10.0
10/11/23,90.3,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,2.3,0.0,2.2,6.6,19.3,13.7,3.0,32.2,0.1,13.0
10/15/23,88.6,0.0,0.0,0.0,0.0,0.1,0.0,0.0,0.1,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,1.6,0.0,0.6,7.4,13.1,9.7,2.4,42.7,0.8,11.6
10/16/23,81.7,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,8.9,0.0,2.1,18.5,6.9,10.5,0.1,32.7,0.1,10.8
10/17/23,90.6,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.8,0.0,0.9,13.4,12.3,10.9,0.4,30.5,2.0,20.2
10/18/23,86.4,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,5.4,0.0,1.2,4.3,21.9,6.3,0.5,34.5,2.5,15.3
10/22/23,92.1,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,1.2,0.0,1.1,3.8,6.4,10.2,0.5,54.9,0.7,14.5
10/23/23,87.3,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,5.2,0.0,0.5,5.8,9.0,6.2,1.7,43.4,1.6,19.1
10/24/23,92.3,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.8,0.0,0.4,3.5,12.4,3.7,0.1,53.3,0.5,18.2
10/25/23,87.7,0.0,0.0,0.0,0.0,0.2,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,3.2,0.0,2.0,7.0,16.7,10.8,0.4,26.1,0.3,24.0
4 changes: 4 additions & 0 deletions SouthBay_sewage_seqs.csv
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Expand Up @@ -124,3 +124,7 @@ Date,Omicron,Delta,Alpha,BA.1,BA.1.1.X,BA.2.X,BA.2.12.X,BA.4.X,BA.5.X,BA.2.75,BA
10/02/23,96.0,0.0,0,0,0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.8,0.6,0.1,28.9,45.0,4.6,16.1,0,0.0
10/05/23,94.3,0.0,0,0,0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,5.8,19.7,0.3,10.6,16.7,1.4,33.6,0,6.5
10/08/23,89.8,0.0,0,0,0,2.1,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,12.1,17.3,2.8,9.9,12.0,0.0,1.5,0,34.9
10/15/23,91.4,0.0,0,0,0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,1.0,13.3,0.7,11.2,22.0,1.6,24.6,0,17.7
10/17/23,91.0,0.0,0,0,0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.8,4.0,2.1,6.1,9.7,2.0,54.0,0,14.5
10/19/23,92.9,0.0,0,0,0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,1.6,2.3,0.4,4.6,27.6,0.1,52.8,0,3.9
10/24/23,90.9,0.0,0,0,0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,1.3,3.8,0.9,16.3,3.1,12.4,40.4,0,13.6

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