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RAxML-NG v0.5.0 BETA

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@amkozlov amkozlov released this 10 Sep 00:38
· 392 commits to master since this release
0.5.0
ff309cf

CRITICAL BUGFIX:

  • bootstrap support values were consistently underestimated if and only if --all command was used with --bs-trees greater tha 250. Many thanks to Fabricia Nascimento for spotting and reporting this bug!

New features/enhancements:

  • --support command: bootstrap mapping aka computing BS support values using an existing set of bootstrap trees from a newick file (similar to -f b option in old RAxML)
  • site repeats optimization technique as described in (Kobert et al. 2016). This feature is still experimental and disabled by default; it can be enabled with --site-repeats on switch.
  • faster AVX2 kernels for protein data (5%-20% speedup)
  • automatically enable per-rate scalers on very large alignments (>2000 taxa) to prevent numerical underflow
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