Version 1.2.0

Major updates:

• Updated to use NetMHCpan 4.0
• Species option to extract neopeptides from data of murine origin

Fixed issues:

1. Rare frameshift insertions annotated as -/X in VEP file was inserted faulty. This have now been corrected #10
2. Transcript annotation and stop codon occurrence. This have now been corrected #4
3. Normal peptide correction assertion error - cleanup of unwanted peptides (including * or X) was done before peptide mach normal search. This have now been corrected #6

Version 1.1.3

Minor bugfixes

• Compatible with newer version of pandas.
• VEP updates: testing output file, user defined forks and genome assembly.
• Command line compatibility to run GRCh37.

Version 1.1.2

Bugs concerning annotation of transcripts ids fixed, now only including the transcript where the full peptide occurs when summing the expression transcript (TPM).
Error check: checking concordance between expression-type and ensembl ids in the expression input file.