Package #33

Workflow file for this run

.github/workflows/package.yml at 3e981e5

	name: Package

	on:
	push:
	tags:
	- v*

	jobs:

	wheel-linux-aarch64:
	name: Build Linux wheels (Aarch64)
	runs-on: ubuntu-22.04
	strategy:
	matrix:
	python-tag:
	- cp37-manylinux_aarch64
	- cp38-manylinux_aarch64
	- cp39-manylinux_aarch64
	- cp310-manylinux_aarch64
	- cp311-manylinux_aarch64
	- cp312-manylinux_aarch64
	- cp313-manylinux_aarch64
	- pp37-manylinux_aarch64
	- pp38-manylinux_aarch64
	- pp39-manylinux_aarch64
	- pp310-manylinux_aarch64
	steps:
	- uses: actions/checkout@v4
	with:
	submodules: true
	- name: Set up QEMU
	id: qemu
	uses: docker/setup-qemu-action@v2
	with:
	platforms: all
	- name: Build manylinux wheels
	uses: pypa/[email protected]
	env:
	CIBW_ARCHS: aarch64
	CIBW_BUILD: ${{ matrix.python-tag }}
	CIBW_BUILD_VERBOSITY: 2
	CIBW_BEFORE_BUILD: pip install cython
	CIBW_TEST_COMMAND: python -m unittest pyfastani.tests -vv
	CIBW_TEST_REQUIRES: importlib-resources biopython
	with:
	output-dir: dist
	- uses: actions/upload-artifact@v4
	with:
	name: wheels-${{ matrix.python-tag }}
	path: dist/*

	wheel-linux-x86_64:
	name: Build Linux wheels (x86-64)
	runs-on: ubuntu-20.04
	strategy:
	matrix:
	python-tag:
	- cp37-manylinux_x86_64
	- cp38-manylinux_x86_64
	- cp39-manylinux_x86_64
	- cp310-manylinux_x86_64
	- cp311-manylinux_x86_64
	- cp312-manylinux_x86_64
	- cp313-manylinux_x86_64
	- pp37-manylinux_x86_64
	- pp38-manylinux_x86_64
	- pp39-manylinux_x86_64
	- pp310-manylinux_x86_64
	steps:
	- uses: actions/checkout@v4
	with:
	submodules: true
	- name: Build manylinux wheels
	uses: pypa/[email protected]
	env:
	CIBW_ARCHS: x86_64
	CIBW_BUILD: ${{ matrix.python-tag }}
	CIBW_BEFORE_BUILD: pip install cython
	CIBW_BUILD_VERBOSITY: 2
	CIBW_TEST_COMMAND: python -m unittest pyfastani.tests -vv
	CIBW_TEST_REQUIRES: importlib-resources biopython
	with:
	output-dir: dist
	- uses: actions/upload-artifact@v4
	with:
	name: wheels-${{ matrix.python-tag }}
	path: dist/*

	wheel-macos-x86_64:
	name: Build MacOS wheels (x86-64)
	runs-on: macOS-12
	strategy:
	matrix:
	python-tag:
	- cp37-macosx_x86_64
	- cp38-macosx_x86_64
	- cp39-macosx_x86_64
	- cp310-macosx_x86_64
	- cp311-macosx_x86_64
	- cp312-macosx_x86_64
	- cp313-macosx_x86_64
	- pp37-macosx_x86_64
	- pp38-macosx_x86_64
	- pp39-macosx_x86_64
	- pp310-macosx_x86_64
	steps:
	- uses: actions/checkout@v4
	with:
	submodules: true
	- name: Build manylinux wheels
	uses: pypa/[email protected]
	env:
	CIBW_ARCHS: x86_64
	CIBW_BUILD: ${{ matrix.python-tag }}
	CIBW_BEFORE_BUILD: pip install cython
	CIBW_BUILD_VERBOSITY: 2
	CIBW_TEST_COMMAND: python -m unittest pyfastani.tests -vv
	CIBW_TEST_REQUIRES: importlib-resources biopython
	CIBW_ENVIRONMENT_MACOS: MACOSX_DEPLOYMENT_TARGET=10.12
	with:
	output-dir: dist
	- uses: actions/upload-artifact@v4
	with:
	name: wheels-${{ matrix.python-tag }}
	path: dist/*

	wheel-macos-aarch64:
	name: Build MacOS wheels (Aarch64)
	runs-on: macOS-12
	strategy:
	matrix:
	python-tag:
	- cp38-macosx_arm64
	- cp39-macosx_arm64
	- cp310-macosx_arm64
	- cp311-macosx_arm64
	- cp312-macosx_arm64
	- cp313-macosx_arm64
	steps:
	- uses: actions/checkout@v4
	with:
	submodules: true
	- name: Build manylinux wheels
	uses: pypa/[email protected]
	env:
	CIBW_ARCHS: arm64
	CIBW_BUILD: ${{ matrix.python-tag }}
	CIBW_BEFORE_BUILD: pip install cython
	CIBW_BUILD_VERBOSITY: 2
	CIBW_TEST_COMMAND: python -m unittest pyfastani.tests -vv
	CIBW_TEST_REQUIRES: importlib-resources biopython
	CIBW_ENVIRONMENT_MACOS: MACOSX_DEPLOYMENT_TARGET=10.12
	with:
	output-dir: dist
	- uses: actions/upload-artifact@v4
	with:
	name: wheels-${{ matrix.python-tag }}
	path: dist/*

	# wheel-win32-x86_64:
	# name: Build Windows wheels (x86-64)
	# runs-on: windows-2019
	# strategy:
	# matrix:
	# python-tag:
	# - cp37-win_amd64
	# - cp38-win_amd64
	# - cp39-win_amd64
	# - cp310-win_amd64
	# - cp311-win_amd64
	# - cp312-win_amd64
	# - cp313-win_amd64
	# - pp37-win_amd64
	# - pp38-win_amd64
	# - pp39-win_amd64
	# steps:
	# - uses: actions/checkout@v4
	# with:
	# submodules: true
	# - uses: actions-rs/toolchain@v1
	# with:
	# toolchain: stable
	# override: true
	# - name: Build manylinux wheels
	# uses: pypa/[email protected]
	# env:
	# CIBW_ARCHS: AMD64
	# CIBW_BUILD: ${{ matrix.python-tag }}
	# CIBW_BEFORE_BUILD: pip install cython
	# CIBW_BUILD_VERBOSITY: 2
	# CIBW_TEST_COMMAND: python -m unittest pyfastani.tests -vv
	# CIBW_TEST_REQUIRES: importlib-resources
	# with:
	# output-dir: dist
	# - name: Store built wheels
	# uses: actions/upload-artifact@v4
	# with:
	# name: wheels-${{ matrix.python-tag }}
	# path: dist/*

	sdist:
	runs-on: ubuntu-latest
	name: Build source distribution
	steps:
	- uses: actions/checkout@v4
	with:
	submodules: true
	- name: Set up Python 3.13
	uses: actions/setup-python@v5
	with:
	python-version: '3.13'
	- name: Install build requirements
	run: python -m pip install -r .github/workflows/requirements.txt
	- name: Build source distribution
	run: python -m build -s .
	- name: Store built source distribution
	uses: actions/upload-artifact@v4
	with:
	name: sdist
	path: dist/*

	test-sdist:
	runs-on: ubuntu-latest
	name: Test source distribution
	needs:
	- sdist
	steps:
	- name: Setup Python 3.13
	uses: actions/setup-python@v5
	with:
	python-version: '3.13'
	- name: Download source distribution
	uses: actions/download-artifact@v4
	with:
	name: sdist
	path: dist/
	- name: Update pip to latest version
	run: python -m pip install -U pip setuptools wheel
	- name: Install built wheel
	run: python -m pip install --no-binary pyfastani --find-links=dist pyfastani
	- name: Run tests without coverage
	run: python -m unittest pyfastani.tests -vv

	upload:
	environment: PyPI
	runs-on: ubuntu-latest
	name: Upload
	needs:
	- sdist
	- test-sdist
	- wheel-linux-aarch64
	- wheel-linux-x86_64
	- wheel-macos-aarch64
	- wheel-macos-x86_64
	# - wheel-win32-x86_64
	steps:
	- name: Download source distribution
	uses: actions/download-artifact@v4
	with:
	name: sdist
	path: dist/
	merge-multiple: true
	- name: Download wheel distributions
	uses: actions/download-artifact@v4
	with:
	pattern: wheels-*
	path: dist/
	merge-multiple: true
	- uses: pypa/gh-action-pypi-publish@release/v1
	if: startsWith(github.ref, 'refs/tags')

	release:
	environment: GitHub Releases
	runs-on: ubuntu-latest
	if: "!contains(github.ref, 'rc')"
	name: Release
	needs: upload
	permissions: write-all
	steps:
	- uses: actions/checkout@v4
	with:
	submodules: true
	- uses: rasmus-saks/[email protected]
	with:
	github-token: '${{ secrets.GITHUB_TOKEN }}'

	aur:
	environment: Arch Linux User Repository
	runs-on: ubuntu-latest
	if: "!contains(github.ref, 'rc')"
	name: Update AUR package
	needs:
	- sdist
	- upload
	steps:
	- uses: actions/checkout@v4
	with:
	submodules: true
	- name: Set up Python 3.10
	uses: actions/setup-python@v5
	with:
	python-version: '3.10'
	- name: Download built wheels
	uses: actions/download-artifact@v2
	with:
	name: wheels
	path: dist
	- name: Extract package version
	run: echo PKGVER=$(echo ${{ github.ref }} \| cut -dv -f2) >> $GITHUB_ENV
	- name: Compute SHA256 of source distribution
	run: echo SHA256=$(sha256sum dist/pyfastani-${{ env.PKGVER }}.tar.gz \| cut -f1 -d' ') >> $GITHUB_ENV
	- name: Generate PKGBUILD
	run: sed -e "s/%pkgver/${{ env.PKGVER }}/g" -e "s/%sha256sum/${{ env.SHA256 }}/g" pkg/aur/PKGBUILD.in > pkg/aur/PKGBUILD
	- name: Update package
	uses: KSXGitHub/[email protected]
	with:
	pkgname: python-pyfastani
	pkgbuild: pkg/aur/PKGBUILD
	commit_username: ${{ secrets.AUR_USER }}
	commit_email: ${{ secrets.AUR_EMAIL }}
	ssh_private_key: ${{ secrets.AUR_SSH_PRIVATE_KEY }}
	commit_message: ${{ github.event.head_commit.message }}

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Package #33

Workflow file

Package #33

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Workflow file for this run