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datasets
datasets
 
 
include
include
 
 
.gitignore
.gitignore
 
 
AlgorithmOld.py
AlgorithmOld.py
 
 
B-tree.hh
B-tree.hh
 
 
B_tree_node.hh
B_tree_node.hh
 
 
B_tree_operations.h
B_tree_operations.h
 
 
CMakeLists.txt
CMakeLists.txt
 
 
LICENSE
LICENSE
 
 
Minimizer.h
Minimizer.h
 
 
README.md
README.md
 
 
Variant.h
Variant.h
 
 
benchmark.cpp
benchmark.cpp
 
 
brute_force.h
brute_force.h
 
 
brute_force_normal_string.h
brute_force_normal_string.h
 
 
cw-bwt.cpp
cw-bwt.cpp
 
 
debug.cpp
debug.cpp
 
 
dynamic_minimizer.h
dynamic_minimizer.h
 
 
dynamic_minimizer_no.h
dynamic_minimizer_no.h
 
 
dynseq_functions.h
dynseq_functions.h
 
 
generate_random_test_cases.h
generate_random_test_cases.h
 
 
get_kmer_minimizers.h
get_kmer_minimizers.h
 
 
h0_lz77.cpp
h0_lz77.cpp
 
 
main.cpp
main.cpp
 
 
main.h
main.h
 
 
rle_bwt.cpp
rle_bwt.cpp
 
 
rle_lz77_v1.cpp
rle_lz77_v1.cpp
 
 
rle_lz77_v2.cpp
rle_lz77_v2.cpp
 
 

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DYNAMIC MINIMIZER: a library capable to compute dynamic minimizers

Contributors

The library was written by Alexander Petri during his Master's thesis.

While the algorithm itself was implemented by Alexander Petri, the B-tree as well as the Dynamic String are libraries which were provided by Simon Puglisi and Massimiliano Rossi.

Data structures

Algorithms

TODO:

Download

git clone https://github.com/aljpetri/DynamicMinimizer

Compile

Usage

About

Dynamic updates of Minimizers

Topics

minimizers

Resources

Readme

License

MIT license
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  • C++ 79.2%
  • Python 20.4%
  • CMake 0.4%