fix actions

.github/workflows/ci.yaml

@@ -25,6 +25,12 @@ jobs:
         with:
           python-version: ${{ matrix.python-version }}
 
+        # Clean python cache files
+      - name: Clean cache files
+        run: |
+          find . -type f -name "*.pyc" -delete
+          find . -type d -name "__pycache__" -delete
+          rm -f .coverage* coverage.xml
       # Cache Poetry dependencies
       # - name: Cache dependencies
       #   uses: actions/cache@v2
@@ -56,10 +62,15 @@ jobs:
         run: |
           poetry run python -c "import torch; print(torch.__version__); print('CUDA available:', torch.cuda.is_available())"
       
+      - name: Debug Coverage Config
+        run: |
+          cat pyproject.toml
+          poetry run coverage debug config
+
       - name: Run Tests with Coverage
         run: |
-          poetry run coverage run -m pytest
-          poetry run coverage xml -o coverage.xml
+          poetry run coverage run --source=. -m pytest
+          poetry run coverage xml -i -o coverage.xml
         env: 
           COVERAGE_FILE: ".coverage.${{ matrix.python-version }}"
 

pyproject.toml

@@ -42,7 +42,7 @@ black = "^23.10.1"
 pre-commit = "^3.5.0"
 jupyter-book = "^1.0.0"
 pytest-cov = "^4.1.0"
-coverage = "^7.3.1"
+coverage = "^7.6.4"
 plotnine = "^0.13.6"
 
 
@@ -56,4 +56,8 @@ requires = ["poetry-core"]
 build-backend = "poetry.core.masonry.api"
 
 [tool.coverage.run]
-relative_files = true
+relative_files = true
+source = [
+    ".",
+    "/tmp"
+]