fix bug with call to bwa

aidenlab · Nov 8, 2017 · a093190 · a093190
1 parent 7095d6f
commit a093190
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/CPU/juicer.sh b/CPU/juicer.sh
@@ -60,7 +60,7 @@
 shopt -s extglob
 juicer_version="1.5.6" 
 ### LOAD BWA AND SAMTOOLS
-bwa_cmd="/home/neva/bwa-0.7.17/bwa"
+bwa_cmd="bwa"
 # fastq files should look like filename_R1.fastq and filename_R2.fastq 
 # if your fastq files look different, change this value
 read1str="_R1"