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trying to fix failed github action
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JaneSullivan-NOAA committed Aug 21, 2024
1 parent a29f81f commit 0754d6d
Showing 1 changed file with 4 additions and 3 deletions.
7 changes: 4 additions & 3 deletions vignettes/ex4_model_validation.Rmd
Original file line number Diff line number Diff line change
Expand Up @@ -25,6 +25,7 @@ knitr::opts_chunk$set(warning = FALSE, message = FALSE)
```

```{r setup, warning = FALSE, message = FALSE, echo=FALSE,results='hide',fig.keep='all'}
knitr::opts_chunk$set(echo = TRUE)
library(ggplot2)
library(readr)
Expand Down Expand Up @@ -88,7 +89,7 @@ First, we run the model for each stock. The AI Pcod model (pcod_mod) uses a sing
set.seed(415) # for reproducibility, use a seed
# first, get the p-cod data set up
pcod_bio_dat <- read_csv("ai_pcod_2022_biomass_dat.csv")
pcod_bio_dat <- readr::read_csv("ai_pcod_2022_biomass_dat.csv")
pcod_input <- prepare_rema_input(model_name = "p_cod",
biomass_dat = pcod_bio_dat,
# one strata
Expand All @@ -98,8 +99,8 @@ pcod_input <- prepare_rema_input(model_name = "p_cod",
pcod_mod <- fit_rema(pcod_input)
# next, get the thornyhead data set up
thrn_bio_dat <- read_csv("goa_thornyhead_2022_biomass_dat.csv")
thrn_cpue_dat <- read_csv("goa_thornyhead_2022_cpue_dat.csv")
thrn_bio_dat <- readr::read_csv("goa_thornyhead_2022_biomass_dat.csv")
thrn_cpue_dat <- readr::read_csv("goa_thornyhead_2022_cpue_dat.csv")
thrn_input <- prepare_rema_input(model_name = 'thrnhead_rockfish',
multi_survey = TRUE,
biomass_dat = thrn_bio_dat,
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