upgrade packages

extras/docs/environment.yml

@@ -5,4 +5,4 @@ channels:
  - defaults
 dependencies:
  # this needs to stay in sync with ../environment.yml
- - jupyter-book=0.15.1
+ - jupyter-book=1.0.2

extras/environment.lock.yml

@@ -4,230 +4,241 @@ channels:
  - defaults
  - conda-forge
 dependencies:
- - accessible-pygments=0.0.4=pyhd8ed1ab_0
+ - accessible-pygments=0.0.5=pyhd8ed1ab_0
  - alabaster=0.7.16=pyhd8ed1ab_0
- - anyio=4.3.0=pyhd8ed1ab_0
+ - anyio=4.5.0=pyhd8ed1ab_0
  - appnope=0.1.4=pyhd8ed1ab_0
  - argon2-cffi=23.1.0=pyhd8ed1ab_0
- - argon2-cffi-bindings=21.2.0=py310h2aa6e3c_4
+ - argon2-cffi-bindings=21.2.0=py310h493c2e1_5
  - arrow=1.3.0=pyhd8ed1ab_0
  - asttokens=2.4.1=pyhd8ed1ab_0
  - async-lru=2.0.4=pyhd8ed1ab_0
- - attrs=23.2.0=pyh71513ae_0
- - autopep8=2.0.4=pyhd8ed1ab_0
+ - attrs=24.2.0=pyh71513ae_0
+ - autopep8=2.3.1=pyhd8ed1ab_0
  - babel=2.14.0=pyhd8ed1ab_0
  - beautifulsoup4=4.12.3=pyha770c72_0
- - black=24.2.0=py310hbe9552e_0
+ - black=24.8.0=py310hbe9552e_1
  - bleach=6.1.0=pyhd8ed1ab_0
- - brotli-python=1.1.0=py310h1253130_1
- - bzip2=1.0.8=h93a5062_5
- - ca-certificates=2024.2.2=hf0a4a13_0
+ - brotli-python=1.1.0=py310hb4ad77e_2
+ - bzip2=1.0.8=h99b78c6_7
+ - ca-certificates=2024.8.30=hf0a4a13_0
  - cached-property=1.5.2=hd8ed1ab_1
  - cached_property=1.5.2=pyha770c72_1
- - certifi=2024.2.2=pyhd8ed1ab_0
- - cffi=1.16.0=py310hdcd7c05_0
+ - certifi=2024.8.30=pyhd8ed1ab_0
+ - cffi=1.17.1=py310h497396d_0
  - charset-normalizer=3.3.2=pyhd8ed1ab_0
  - click=8.1.7=unix_pyh707e725_0
  - colorama=0.4.6=pyhd8ed1ab_0
  - comm=0.2.2=pyhd8ed1ab_0
- - dataclasses=0.8=pyhc8e2a94_3
- - debugpy=1.8.1=py310h692a8b6_0
+ - debugpy=1.8.5=py310hb4ad77e_1
  - decorator=5.1.1=pyhd8ed1ab_0
  - defusedxml=0.7.1=pyhd8ed1ab_0
- - docutils=0.18.1=py310hbe9552e_1
+ - docutils=0.20.1=py310hbe9552e_3
  - entrypoints=0.4=pyhd8ed1ab_0
- - exceptiongroup=1.2.0=pyhd8ed1ab_2
- - executing=2.0.1=pyhd8ed1ab_0
+ - exceptiongroup=1.2.2=pyhd8ed1ab_0
+ - executing=2.1.0=pyhd8ed1ab_0
  - fqdn=1.5.1=pyhd8ed1ab_0
- - gettext=0.21.1=h0186832_0
+ - gettext=0.22.5=h8414b35_3
+ - gettext-tools=0.22.5=h8414b35_3
  - gitdb=4.0.11=pyhd8ed1ab_0
- - gitpython=3.1.42=pyhd8ed1ab_0
- - greenlet=3.0.3=py310h692a8b6_0
+ - gitpython=3.1.43=pyhd8ed1ab_0
+ - greenlet=3.1.0=py310hb4ad77e_2
  - h11=0.14.0=pyhd8ed1ab_0
  - h2=4.1.0=pyhd8ed1ab_0
  - hpack=4.0.0=pyh9f0ad1d_0
  - html5lib=1.1=pyh9f0ad1d_0
- - httpcore=1.0.4=pyhd8ed1ab_0
- - httpx=0.27.0=pyhd8ed1ab_0
+ - httpcore=1.0.5=pyhd8ed1ab_0
+ - httpx=0.27.2=pyhd8ed1ab_0
  - hyperframe=6.0.1=pyhd8ed1ab_0
- - icu=73.2=hc8870d7_0
- - idna=3.6=pyhd8ed1ab_0
+ - icu=75.1=hfee45f7_0
+ - idna=3.10=pyhd8ed1ab_0
  - imagesize=1.4.1=pyhd8ed1ab_0
- - importlib-metadata=7.0.2=pyha770c72_0
- - importlib_metadata=7.0.2=hd8ed1ab_0
- - importlib_resources=6.3.0=pyhd8ed1ab_0
+ - importlib-metadata=8.5.0=pyha770c72_0
+ - importlib_metadata=8.5.0=hd8ed1ab_0
+ - importlib_resources=6.4.5=pyhd8ed1ab_0
  - iniconfig=2.0.0=pyhd8ed1ab_0
- - ipykernel=6.29.3=pyh3cd1d5f_0
- - ipytest=0.13.3=pyhd8ed1ab_0
- - ipython=8.22.2=pyh707e725_0
- - ipywidgets=8.1.2=pyhd8ed1ab_0
+ - ipykernel=6.29.5=pyh57ce528_0
+ - ipytest=0.14.2=pyhd8ed1ab_0
+ - ipython=8.27.0=pyh707e725_0
+ - ipywidgets=8.1.5=pyhd8ed1ab_0
  - isoduration=20.11.0=pyhd8ed1ab_0
  - jedi=0.19.1=pyhd8ed1ab_0
- - jinja2=3.1.3=pyhd8ed1ab_0
- - json5=0.9.23=pyhd8ed1ab_0
- - jsonpointer=2.4=py310hbe9552e_3
- - jsonschema=4.21.1=pyhd8ed1ab_0
+ - jinja2=3.1.4=pyhd8ed1ab_0
+ - json5=0.9.25=pyhd8ed1ab_0
+ - jsonpointer=3.0.0=py310hbe9552e_1
+ - jsonschema=4.23.0=pyhd8ed1ab_0
  - jsonschema-specifications=2023.12.1=pyhd8ed1ab_0
- - jsonschema-with-format-nongpl=4.21.1=pyhd8ed1ab_0
- - jupyter-book=0.15.1=pyhd8ed1ab_0
- - jupyter-cache=0.6.1=pyhd8ed1ab_0
- - jupyter-lsp=2.2.4=pyhd8ed1ab_0
- - jupyter-resource-usage=1.0.2=pyhd8ed1ab_0
+ - jsonschema-with-format-nongpl=4.23.0=hd8ed1ab_0
+ - jupyter-book=1.0.2=pyhd8ed1ab_0
+ - jupyter-cache=1.0.0=pyhd8ed1ab_0
+ - jupyter-lsp=2.2.5=pyhd8ed1ab_0
+ - jupyter-resource-usage=1.1.0=pyhd8ed1ab_0
  - jupyter-server-mathjax=0.2.6=pyh5bfe37b_1
- - jupyter_client=8.6.1=pyhd8ed1ab_0
+ - jupyter_client=8.6.3=pyhd8ed1ab_0
  - jupyter_core=5.7.2=py310hbe9552e_0
- - jupyter_events=0.9.1=pyhd8ed1ab_0
- - jupyter_server=2.13.0=pyhd8ed1ab_0
+ - jupyter_events=0.10.0=pyhd8ed1ab_0
+ - jupyter_server=2.14.2=pyhd8ed1ab_0
  - jupyter_server_terminals=0.5.3=pyhd8ed1ab_0
- - jupyterlab=4.1.5=pyhd8ed1ab_0
+ - jupyterlab=4.2.5=pyhd8ed1ab_0
  - jupyterlab_pygments=0.3.0=pyhd8ed1ab_1
  - jupyterlab_rise=0.42.0=pyhd8ed1ab_0
- - jupyterlab_server=2.25.4=pyhd8ed1ab_0
- - jupyterlab_widgets=3.0.10=pyhd8ed1ab_0
+ - jupyterlab_server=2.27.3=pyhd8ed1ab_0
+ - jupyterlab_widgets=3.0.13=pyhd8ed1ab_0
  - kaleido-core=0.2.1=h27ca646_0
+ - krb5=1.21.3=h237132a_0
  - latexcodec=2.0.1=pyh9f0ad1d_0
- - libblas=3.9.0=21_osxarm64_openblas
- - libcblas=3.9.0=21_osxarm64_openblas
- - libcxx=16.0.6=h4653b0c_0
+ - libasprintf=0.22.5=h8414b35_3
+ - libasprintf-devel=0.22.5=h8414b35_3
+ - libblas=3.9.0=24_osxarm64_openblas
+ - libcblas=3.9.0=24_osxarm64_openblas
+ - libcxx=19.1.0=ha82da77_0
+ - libedit=3.1.20191231=hc8eb9b7_2
  - libffi=3.4.2=h3422bc3_5
+ - libgettextpo=0.22.5=h8414b35_3
+ - libgettextpo-devel=0.22.5=h8414b35_3
  - libgfortran=5.0.0=13_2_0_hd922786_3
  - libgfortran5=13.2.0=hf226fd6_3
  - libiconv=1.17=h0d3ecfb_2
  - libidn2=2.3.7=h93a5062_0
- - liblapack=3.9.0=21_osxarm64_openblas
- - libopenblas=0.3.26=openmp_h6c19121_0
- - libsodium=1.0.18=h27ca646_1
- - libsqlite=3.45.2=h091b4b1_0
+ - libintl=0.22.5=h8414b35_3
+ - libintl-devel=0.22.5=h8414b35_3
+ - liblapack=3.9.0=24_osxarm64_openblas
+ - libopenblas=0.3.27=openmp_h517c56d_1
+ - libsodium=1.0.20=h99b78c6_0
+ - libsqlite=3.46.1=hc14010f_0
  - libunistring=0.9.10=h3422bc3_0
- - libxml2=2.12.5=h0d0cfa8_0
+ - libxml2=2.12.7=h01dff8b_4
  - libxslt=1.1.39=h223e5b9_0
- - libzlib=1.2.13=h53f4e23_5
+ - libzlib=1.3.1=hfb2fe0b_1
  - linkify-it-py=2.0.3=pyhd8ed1ab_0
- - llvm-openmp=18.1.1=hcd81f8e_0
- - lxml=5.1.0=py310hd9ecdb4_0
- - markdown-it-py=2.2.0=pyhd8ed1ab_0
- - markupsafe=2.1.5=py310hd125d64_0
+ - llvm-openmp=18.1.8=hde57baf_1
+ - lxml=5.3.0=py310hed7ee58_1
+ - markdown-it-py=3.0.0=pyhd8ed1ab_0
+ - markupsafe=2.1.5=py310h493c2e1_1
  - mathjax=2.7.7=hce30654_3
- - matplotlib-inline=0.1.6=pyhd8ed1ab_0
- - mdit-py-plugins=0.4.0=pyhd8ed1ab_0
+ - matplotlib-inline=0.1.7=pyhd8ed1ab_0
+ - mdit-py-plugins=0.4.2=pyhd8ed1ab_0
  - mdurl=0.1.2=pyhd8ed1ab_0
  - mistune=3.0.2=pyhd8ed1ab_0
  - mypy_extensions=1.0.0=pyha770c72_0
- - myst-nb=0.17.2=pyhd8ed1ab_0
- - myst-parser=0.18.1=pyhd8ed1ab_0
- - nb_conda_kernels=2.3.1=pyh707e725_4
- - nbclient=0.7.4=pyhd8ed1ab_0
- - nbconvert=7.16.2=pyhd8ed1ab_0
- - nbconvert-core=7.16.2=pyhd8ed1ab_0
- - nbconvert-pandoc=7.16.2=pyhd8ed1ab_0
- - nbdime=4.0.1=pyhd8ed1ab_0
- - nbformat=5.10.3=pyhd8ed1ab_0
- - nbqa=1.8.4=pyhd8ed1ab_0
- - ncurses=6.4=h463b476_2
+ - myst-nb=1.1.1=pyhd8ed1ab_0
+ - myst-parser=2.0.0=pyhd8ed1ab_0
+ - nb_conda_kernels=2.5.1=pyh707e725_2
+ - nbclient=0.10.0=pyhd8ed1ab_0
+ - nbconvert=7.16.4=hd8ed1ab_1
+ - nbconvert-core=7.16.4=pyhd8ed1ab_1
+ - nbconvert-pandoc=7.16.4=hd8ed1ab_1
+ - nbdime=4.0.2=pyhd8ed1ab_0
+ - nbformat=5.10.4=pyhd8ed1ab_0
+ - nbqa=1.9.0=pyhd8ed1ab_0
+ - ncurses=6.5=h7bae524_1
  - nest-asyncio=1.6.0=pyhd8ed1ab_0
- - notebook=7.1.2=pyhd8ed1ab_0
+ - notebook=7.2.2=pyhd8ed1ab_0
  - notebook-shim=0.2.4=pyhd8ed1ab_0
  - numpy=1.26.4=py310hd45542a_0
- - openssl=3.2.1=h0d3ecfb_0
+ - openssl=3.3.2=h8359307_0
  - overrides=7.7.0=pyhd8ed1ab_0
- - packaging=24.0=pyhd8ed1ab_0
- - pandas=1.5.3=py310h2b830bf_1
- - pandoc=3.1.12.2=hce30654_0
+ - packaging=24.1=pyhd8ed1ab_0
+ - pandas=2.1.4=py310h6e3cc31_0
+ - pandoc=3.4=hce30654_0
  - pandocfilters=1.5.0=pyhd8ed1ab_0
- - parso=0.8.3=pyhd8ed1ab_0
+ - parso=0.8.4=pyhd8ed1ab_0
  - pathspec=0.12.1=pyhd8ed1ab_0
  - patsy=0.5.6=pyhd8ed1ab_0
  - pexpect=4.9.0=pyhd8ed1ab_0
  - pickleshare=0.7.5=py_1003
- - pip=24.0=pyhd8ed1ab_0
+ - pip=24.2=pyh8b19718_1
  - pkgutil-resolve-name=1.3.10=pyhd8ed1ab_1
- - platformdirs=4.2.0=pyhd8ed1ab_0
- - plotly=5.15.0=pyhd8ed1ab_0
- - pluggy=1.4.0=pyhd8ed1ab_0
+ - platformdirs=4.3.6=pyhd8ed1ab_0
+ - plotly=5.24.1=pyhd8ed1ab_0
+ - pluggy=1.5.0=pyhd8ed1ab_0
  - prometheus_client=0.20.0=pyhd8ed1ab_0
- - prompt-toolkit=3.0.42=pyha770c72_0
+ - prompt-toolkit=3.0.47=pyha770c72_0
  - psutil=5.9.8=py310hd125d64_0
  - ptyprocess=0.7.0=pyhd3deb0d_0
- - pure_eval=0.2.2=pyhd8ed1ab_0
+ - pure_eval=0.2.3=pyhd8ed1ab_0
  - pybtex=0.24.0=pyhd8ed1ab_2
- - pybtex-docutils=1.0.3=py310hbe9552e_1
- - pycodestyle=2.11.1=pyhd8ed1ab_0
- - pycparser=2.21=pyhd8ed1ab_0
- - pydata-sphinx-theme=0.15.2=pyhd8ed1ab_0
- - pygments=2.17.2=pyhd8ed1ab_0
- - pyobjc-core=10.2=py310hb3aa912_0
- - pyobjc-framework-cocoa=10.2=py310hb3aa912_0
+ - pybtex-docutils=1.0.3=py310hbe9552e_2
+ - pycodestyle=2.12.1=pyhd8ed1ab_0
+ - pycparser=2.22=pyhd8ed1ab_0
+ - pydata-sphinx-theme=0.15.4=pyhd8ed1ab_0
+ - pygments=2.18.0=pyhd8ed1ab_0
+ - pyobjc-core=10.3.1=py310hb3dec1a_1
+ - pyobjc-framework-cocoa=10.3.1=py310hb3dec1a_1
  - pysocks=1.7.1=pyha2e5f31_6
- - pytest=8.1.1=pyhd8ed1ab_0
+ - pytest=8.3.3=pyhd8ed1ab_0
  - python=3.10.12=h01493a6_0_cpython
  - python-dateutil=2.9.0=pyhd8ed1ab_0
- - python-fastjsonschema=2.19.1=pyhd8ed1ab_0
+ - python-fastjsonschema=2.20.0=pyhd8ed1ab_0
  - python-json-logger=2.0.7=pyhd8ed1ab_0
  - python-kaleido=0.2.1=pyhd8ed1ab_0
- - python_abi=3.10=4_cp310
- - pytz=2024.1=pyhd8ed1ab_0
- - pyyaml=6.0.1=py310h2aa6e3c_1
- - pyzmq=25.1.2=py310hbb13138_0
+ - python-tzdata=2024.1=pyhd8ed1ab_0
+ - python_abi=3.10=5_cp310
+ - pytz=2024.2=pyhd8ed1ab_0
+ - pyyaml=6.0.2=py310h493c2e1_1
+ - pyzmq=26.2.0=py310hcab215c_2
  - readline=8.2=h92ec313_1
- - referencing=0.33.0=pyhd8ed1ab_0
- - requests=2.31.0=pyhd8ed1ab_0
+ - referencing=0.35.1=pyhd8ed1ab_0
+ - requests=2.32.3=pyhd8ed1ab_0
  - rfc3339-validator=0.1.4=pyhd8ed1ab_0
  - rfc3986-validator=0.1.1=pyh9f0ad1d_0
- - rpds-py=0.18.0=py310hf632f72_0
- - scipy=1.12.0=py310hf4b343e_2
- - send2trash=1.8.2=pyhd1c38e8_0
- - setuptools=69.2.0=pyhd8ed1ab_0
+ - rpds-py=0.20.0=py310h7a930dc_1
+ - scipy=1.14.1=py310h35b72dc_0
+ - send2trash=1.8.3=pyh31c8845_0
+ - setuptools=74.1.2=pyhd8ed1ab_0
  - six=1.16.0=pyh6c4a22f_0
  - smmap=5.0.0=pyhd8ed1ab_0
  - sniffio=1.3.1=pyhd8ed1ab_0
  - snowballstemmer=2.2.0=pyhd8ed1ab_0
  - soupsieve=2.5=pyhd8ed1ab_1
- - sphinx=5.0.2=pyh6c4a22f_0
- - sphinx-book-theme=1.0.1=pyhd8ed1ab_0
+ - sphinx=7.4.7=pyhd8ed1ab_0
+ - sphinx-book-theme=1.1.3=pyhd8ed1ab_0
  - sphinx-comments=0.0.3=pyh9f0ad1d_0
  - sphinx-copybutton=0.5.2=pyhd8ed1ab_0
- - sphinx-design=0.3.0=pyhd8ed1ab_0
- - sphinx-external-toc=0.3.1=pyhd8ed1ab_1
- - sphinx-jupyterbook-latex=0.5.2=pyhd8ed1ab_0
+ - sphinx-design=0.6.1=pyhd8ed1ab_1
+ - sphinx-external-toc=1.0.1=pyhd8ed1ab_0
+ - sphinx-jupyterbook-latex=1.0.0=pyhd8ed1ab_0
  - sphinx-multitoc-numbering=0.1.3=pyhd8ed1ab_0
- - sphinx-thebe=0.2.1=pyhd8ed1ab_0
+ - sphinx-thebe=0.3.1=pyhd8ed1ab_0
  - sphinx-togglebutton=0.3.2=pyhd8ed1ab_0
- - sphinxcontrib-applehelp=1.0.8=pyhd8ed1ab_0
- - sphinxcontrib-bibtex=2.5.0=pyhd8ed1ab_0
- - sphinxcontrib-devhelp=1.0.6=pyhd8ed1ab_0
- - sphinxcontrib-htmlhelp=2.0.5=pyhd8ed1ab_0
+ - sphinxcontrib-applehelp=2.0.0=pyhd8ed1ab_0
+ - sphinxcontrib-bibtex=2.6.3=pyhd8ed1ab_0
+ - sphinxcontrib-devhelp=2.0.0=pyhd8ed1ab_0
+ - sphinxcontrib-htmlhelp=2.1.0=pyhd8ed1ab_0
  - sphinxcontrib-jsmath=1.0.1=pyhd8ed1ab_0
- - sphinxcontrib-qthelp=1.0.7=pyhd8ed1ab_0
+ - sphinxcontrib-qthelp=2.0.0=pyhd8ed1ab_0
  - sphinxcontrib-serializinghtml=1.1.10=pyhd8ed1ab_0
- - sqlalchemy=2.0.28=py310hd125d64_0
+ - sqlalchemy=2.0.35=py310h493c2e1_0
  - stack_data=0.6.2=pyhd8ed1ab_0
- - statsmodels=0.14.1=py310h50ce23c_0
+ - statsmodels=0.14.3=py310hae04be4_0
  - tabulate=0.9.0=pyhd8ed1ab_1
- - tenacity=8.2.3=pyhd8ed1ab_0
+ - tenacity=9.0.0=pyhd8ed1ab_0
  - terminado=0.18.1=pyh31c8845_0
- - tinycss2=1.2.1=pyhd8ed1ab_0
+ - tinycss2=1.3.0=pyhd8ed1ab_0
  - tk=8.6.13=h5083fa2_1
- - tokenize-rt=5.2.0=pyhd8ed1ab_1
+ - tokenize-rt=6.0.0=pyhd8ed1ab_0
  - tomli=2.0.1=pyhd8ed1ab_0
- - tornado=6.4=py310hd125d64_0
- - traitlets=5.14.2=pyhd8ed1ab_0
- - types-python-dateutil=2.9.0.20240316=pyhd8ed1ab_0
- - typing-extensions=4.10.0=hd8ed1ab_0
- - typing_extensions=4.10.0=pyha770c72_0
+ - tornado=6.4.1=py310h493c2e1_1
+ - traitlets=5.14.3=pyhd8ed1ab_0
+ - types-python-dateutil=2.9.0.20240906=pyhd8ed1ab_0
+ - typing-extensions=4.12.2=hd8ed1ab_0
+ - typing_extensions=4.12.2=pyha770c72_0
  - typing_utils=0.1.0=pyhd8ed1ab_0
- - tzdata=2024a=h0c530f3_0
+ - tzdata=2024a=h8827d51_1
  - uc-micro-py=1.0.3=pyhd8ed1ab_0
  - uri-template=1.3.0=pyhd8ed1ab_0
- - urllib3=2.2.1=pyhd8ed1ab_0
+ - urllib3=2.2.3=pyhd8ed1ab_0
  - wcwidth=0.2.13=pyhd8ed1ab_0
- - webcolors=1.13=pyhd8ed1ab_0
+ - webcolors=24.8.0=pyhd8ed1ab_0
  - webencodings=0.5.1=pyhd8ed1ab_2
- - websocket-client=1.7.0=pyhd8ed1ab_0
- - wget=1.20.3=h470526e_1
- - wheel=0.42.0=pyhd8ed1ab_0
- - widgetsnbextension=4.0.10=pyhd8ed1ab_0
+ - websocket-client=1.8.0=pyhd8ed1ab_0
+ - wget=1.21.4=he2df1f1_0
+ - wheel=0.44.0=pyhd8ed1ab_0
+ - widgetsnbextension=4.0.13=pyhd8ed1ab_0
  - xz=5.2.6=h57fd34a_0
  - yaml=0.2.5=h3422bc3_2
- - zeromq=4.3.5=hebf3989_1
- - zipp=3.17.0=pyhd8ed1ab_0
- - zlib=1.2.13=h53f4e23_5
+ - zeromq=4.3.5=h64debc3_5
+ - zipp=3.20.2=pyhd8ed1ab_0
+ - zlib=1.3.1=hfb2fe0b_1
+ - zstandard=0.23.0=py310h2665a74_1
+ - zstd=1.5.6=hb46c0d2_0