upgrade Jupyter Book

afeld · Apr 8, 2024 · f4a3198 · f4a3198
1 parent 61e5989
commit f4a3198
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Showing 15 changed files with 25,683 additions and 25,772 deletions.
diff --git a/extras/docs/environment.yml b/extras/docs/environment.yml
@@ -5,4 +5,4 @@ channels:
  - defaults
 dependencies:
  # this needs to stay in sync with ../environment.yml
- - jupyter-book=0.15.1
+ - jupyter-book=1.0.0
diff --git a/extras/environment.lock.yml b/extras/environment.lock.yml
@@ -14,10 +14,10 @@ dependencies:
  - asttokens=2.4.1=pyhd8ed1ab_0
  - async-lru=2.0.4=pyhd8ed1ab_0
  - attrs=23.2.0=pyh71513ae_0
- - autopep8=2.0.4=pyhd8ed1ab_0
+ - autopep8=2.1.0=pyhd8ed1ab_0
  - babel=2.14.0=pyhd8ed1ab_0
  - beautifulsoup4=4.12.3=pyha770c72_0
- - black=24.2.0=py310hbe9552e_0
+ - black=24.3.0=py310hbe9552e_0
  - bleach=6.1.0=pyhd8ed1ab_0
  - brotli-python=1.1.0=py310h1253130_1
  - bzip2=1.0.8=h93a5062_5
@@ -34,28 +34,29 @@ dependencies:
  - debugpy=1.8.1=py310h692a8b6_0
  - decorator=5.1.1=pyhd8ed1ab_0
  - defusedxml=0.7.1=pyhd8ed1ab_0
- - docutils=0.18.1=py310hbe9552e_1
+ - docutils=0.20.1=py310hbe9552e_3
  - entrypoints=0.4=pyhd8ed1ab_0
  - exceptiongroup=1.2.0=pyhd8ed1ab_2
  - executing=2.0.1=pyhd8ed1ab_0
  - fqdn=1.5.1=pyhd8ed1ab_0
- - gettext=0.21.1=h0186832_0
+ - gettext=0.22.5=h8fbad5d_2
+ - gettext-tools=0.22.5=h8fbad5d_2
  - gitdb=4.0.11=pyhd8ed1ab_0
- - gitpython=3.1.42=pyhd8ed1ab_0
+ - gitpython=3.1.43=pyhd8ed1ab_0
  - greenlet=3.0.3=py310h692a8b6_0
  - h11=0.14.0=pyhd8ed1ab_0
  - h2=4.1.0=pyhd8ed1ab_0
  - hpack=4.0.0=pyh9f0ad1d_0
  - html5lib=1.1=pyh9f0ad1d_0
- - httpcore=1.0.4=pyhd8ed1ab_0
+ - httpcore=1.0.5=pyhd8ed1ab_0
  - httpx=0.27.0=pyhd8ed1ab_0
  - hyperframe=6.0.1=pyhd8ed1ab_0
  - icu=73.2=hc8870d7_0
  - idna=3.6=pyhd8ed1ab_0
  - imagesize=1.4.1=pyhd8ed1ab_0
- - importlib-metadata=7.0.2=pyha770c72_0
- - importlib_metadata=7.0.2=hd8ed1ab_0
- - importlib_resources=6.3.0=pyhd8ed1ab_0
+ - importlib-metadata=7.1.0=pyha770c72_0
+ - importlib_metadata=7.1.0=hd8ed1ab_0
+ - importlib_resources=6.4.0=pyhd8ed1ab_0
  - iniconfig=2.0.0=pyhd8ed1ab_0
  - ipykernel=6.29.3=pyh3cd1d5f_0
  - ipytest=0.13.3=pyhd8ed1ab_0
@@ -64,19 +65,19 @@ dependencies:
  - isoduration=20.11.0=pyhd8ed1ab_0
  - jedi=0.19.1=pyhd8ed1ab_0
  - jinja2=3.1.3=pyhd8ed1ab_0
- - json5=0.9.23=pyhd8ed1ab_0
+ - json5=0.9.24=pyhd8ed1ab_0
  - jsonpointer=2.4=py310hbe9552e_3
  - jsonschema=4.21.1=pyhd8ed1ab_0
  - jsonschema-specifications=2023.12.1=pyhd8ed1ab_0
  - jsonschema-with-format-nongpl=4.21.1=pyhd8ed1ab_0
- - jupyter-book=0.15.1=pyhd8ed1ab_0
- - jupyter-cache=0.6.1=pyhd8ed1ab_0
+ - jupyter-book=1.0.0=pyhd8ed1ab_0
+ - jupyter-cache=1.0.0=pyhd8ed1ab_0
  - jupyter-lsp=2.2.4=pyhd8ed1ab_0
  - jupyter-resource-usage=1.0.2=pyhd8ed1ab_0
  - jupyter-server-mathjax=0.2.6=pyh5bfe37b_1
  - jupyter_client=8.6.1=pyhd8ed1ab_0
  - jupyter_core=5.7.2=py310hbe9552e_0
- - jupyter_events=0.9.1=pyhd8ed1ab_0
+ - jupyter_events=0.10.0=pyhd8ed1ab_0
  - jupyter_server=2.13.0=pyhd8ed1ab_0
  - jupyter_server_terminals=0.5.3=pyhd8ed1ab_0
  - jupyterlab=4.1.5=pyhd8ed1ab_0
@@ -86,55 +87,61 @@ dependencies:
  - jupyterlab_widgets=3.0.10=pyhd8ed1ab_0
  - kaleido-core=0.2.1=h27ca646_0
  - latexcodec=2.0.1=pyh9f0ad1d_0
- - libblas=3.9.0=21_osxarm64_openblas
- - libcblas=3.9.0=21_osxarm64_openblas
+ - libasprintf=0.22.5=h8fbad5d_2
+ - libasprintf-devel=0.22.5=h8fbad5d_2
+ - libblas=3.9.0=22_osxarm64_openblas
+ - libcblas=3.9.0=22_osxarm64_openblas
  - libcxx=16.0.6=h4653b0c_0
  - libffi=3.4.2=h3422bc3_5
+ - libgettextpo=0.22.5=h8fbad5d_2
+ - libgettextpo-devel=0.22.5=h8fbad5d_2
  - libgfortran=5.0.0=13_2_0_hd922786_3
  - libgfortran5=13.2.0=hf226fd6_3
  - libiconv=1.17=h0d3ecfb_2
  - libidn2=2.3.7=h93a5062_0
- - liblapack=3.9.0=21_osxarm64_openblas
- - libopenblas=0.3.26=openmp_h6c19121_0
+ - libintl=0.22.5=h8fbad5d_2
+ - libintl-devel=0.22.5=h8fbad5d_2
+ - liblapack=3.9.0=22_osxarm64_openblas
+ - libopenblas=0.3.27=openmp_h6c19121_0
  - libsodium=1.0.18=h27ca646_1
  - libsqlite=3.45.2=h091b4b1_0
  - libunistring=0.9.10=h3422bc3_0
- - libxml2=2.12.5=h0d0cfa8_0
+ - libxml2=2.12.6=h0d0cfa8_1
  - libxslt=1.1.39=h223e5b9_0
  - libzlib=1.2.13=h53f4e23_5
  - linkify-it-py=2.0.3=pyhd8ed1ab_0
- - llvm-openmp=18.1.1=hcd81f8e_0
+ - llvm-openmp=18.1.2=hcd81f8e_0
  - lxml=5.1.0=py310hd9ecdb4_0
- - markdown-it-py=2.2.0=pyhd8ed1ab_0
+ - markdown-it-py=3.0.0=pyhd8ed1ab_0
  - markupsafe=2.1.5=py310hd125d64_0
  - mathjax=2.7.7=hce30654_3
  - matplotlib-inline=0.1.6=pyhd8ed1ab_0
  - mdit-py-plugins=0.4.0=pyhd8ed1ab_0
  - mdurl=0.1.2=pyhd8ed1ab_0
  - mistune=3.0.2=pyhd8ed1ab_0
  - mypy_extensions=1.0.0=pyha770c72_0
- - myst-nb=0.17.2=pyhd8ed1ab_0
- - myst-parser=0.18.1=pyhd8ed1ab_0
+ - myst-nb=1.0.0=pyhd8ed1ab_0
+ - myst-parser=2.0.0=pyhd8ed1ab_0
  - nb_conda_kernels=2.3.1=pyh707e725_4
- - nbclient=0.7.4=pyhd8ed1ab_0
- - nbconvert=7.16.2=pyhd8ed1ab_0
- - nbconvert-core=7.16.2=pyhd8ed1ab_0
- - nbconvert-pandoc=7.16.2=pyhd8ed1ab_0
+ - nbclient=0.10.0=pyhd8ed1ab_0
+ - nbconvert=7.16.3=hd8ed1ab_0
+ - nbconvert-core=7.16.3=pyhd8ed1ab_0
+ - nbconvert-pandoc=7.16.3=hd8ed1ab_0
  - nbdime=4.0.1=pyhd8ed1ab_0
- - nbformat=5.10.3=pyhd8ed1ab_0
- - nbqa=1.8.4=pyhd8ed1ab_0
- - ncurses=6.4=h463b476_2
+ - nbformat=5.10.4=pyhd8ed1ab_0
+ - nbqa=1.8.5=pyhd8ed1ab_0
+ - ncurses=6.4.20240210=h078ce10_0
  - nest-asyncio=1.6.0=pyhd8ed1ab_0
  - notebook=7.1.2=pyhd8ed1ab_0
  - notebook-shim=0.2.4=pyhd8ed1ab_0
  - numpy=1.26.4=py310hd45542a_0
- - openssl=3.2.1=h0d3ecfb_0
+ - openssl=3.2.1=h0d3ecfb_1
  - overrides=7.7.0=pyhd8ed1ab_0
  - packaging=24.0=pyhd8ed1ab_0
  - pandas=1.5.3=py310h2b830bf_1
- - pandoc=3.1.12.2=hce30654_0
+ - pandoc=3.1.13=hce30654_0
  - pandocfilters=1.5.0=pyhd8ed1ab_0
- - parso=0.8.3=pyhd8ed1ab_0
+ - parso=0.8.4=pyhd8ed1ab_0
  - pathspec=0.12.1=pyhd8ed1ab_0
  - patsy=0.5.6=pyhd8ed1ab_0
  - pexpect=4.9.0=pyhd8ed1ab_0
@@ -152,7 +159,7 @@ dependencies:
  - pybtex=0.24.0=pyhd8ed1ab_2
  - pybtex-docutils=1.0.3=py310hbe9552e_1
  - pycodestyle=2.11.1=pyhd8ed1ab_0
- - pycparser=2.21=pyhd8ed1ab_0
+ - pycparser=2.22=pyhd8ed1ab_0
  - pydata-sphinx-theme=0.15.2=pyhd8ed1ab_0
  - pygments=2.17.2=pyhd8ed1ab_0
  - pyobjc-core=10.2=py310hb3aa912_0
@@ -169,37 +176,37 @@ dependencies:
  - pyyaml=6.0.1=py310h2aa6e3c_1
  - pyzmq=25.1.2=py310hbb13138_0
  - readline=8.2=h92ec313_1
- - referencing=0.33.0=pyhd8ed1ab_0
+ - referencing=0.34.0=pyhd8ed1ab_0
  - requests=2.31.0=pyhd8ed1ab_0
  - rfc3339-validator=0.1.4=pyhd8ed1ab_0
  - rfc3986-validator=0.1.1=pyh9f0ad1d_0
  - rpds-py=0.18.0=py310hf632f72_0
- - scipy=1.12.0=py310hf4b343e_2
+ - scipy=1.13.0=py310hf4b343e_0
  - send2trash=1.8.2=pyhd1c38e8_0
  - setuptools=69.2.0=pyhd8ed1ab_0
  - six=1.16.0=pyh6c4a22f_0
  - smmap=5.0.0=pyhd8ed1ab_0
  - sniffio=1.3.1=pyhd8ed1ab_0
  - snowballstemmer=2.2.0=pyhd8ed1ab_0
  - soupsieve=2.5=pyhd8ed1ab_1
- - sphinx=5.0.2=pyh6c4a22f_0
- - sphinx-book-theme=1.0.1=pyhd8ed1ab_0
+ - sphinx=7.2.6=pyhd8ed1ab_0
+ - sphinx-book-theme=1.1.2=pyhd8ed1ab_0
  - sphinx-comments=0.0.3=pyh9f0ad1d_0
  - sphinx-copybutton=0.5.2=pyhd8ed1ab_0
- - sphinx-design=0.3.0=pyhd8ed1ab_0
- - sphinx-external-toc=0.3.1=pyhd8ed1ab_1
- - sphinx-jupyterbook-latex=0.5.2=pyhd8ed1ab_0
+ - sphinx-design=0.5.0=pyhd8ed1ab_0
+ - sphinx-external-toc=1.0.1=pyhd8ed1ab_0
+ - sphinx-jupyterbook-latex=1.0.0=pyhd8ed1ab_0
  - sphinx-multitoc-numbering=0.1.3=pyhd8ed1ab_0
- - sphinx-thebe=0.2.1=pyhd8ed1ab_0
+ - sphinx-thebe=0.3.1=pyhd8ed1ab_0
  - sphinx-togglebutton=0.3.2=pyhd8ed1ab_0
  - sphinxcontrib-applehelp=1.0.8=pyhd8ed1ab_0
- - sphinxcontrib-bibtex=2.5.0=pyhd8ed1ab_0
+ - sphinxcontrib-bibtex=2.6.2=pyhd8ed1ab_0
  - sphinxcontrib-devhelp=1.0.6=pyhd8ed1ab_0
  - sphinxcontrib-htmlhelp=2.0.5=pyhd8ed1ab_0
  - sphinxcontrib-jsmath=1.0.1=pyhd8ed1ab_0
  - sphinxcontrib-qthelp=1.0.7=pyhd8ed1ab_0
  - sphinxcontrib-serializinghtml=1.1.10=pyhd8ed1ab_0
- - sqlalchemy=2.0.28=py310hd125d64_0
+ - sqlalchemy=2.0.29=py310hd125d64_0
  - stack_data=0.6.2=pyhd8ed1ab_0
  - statsmodels=0.14.1=py310h50ce23c_0
  - tabulate=0.9.0=pyhd8ed1ab_1
@@ -212,8 +219,8 @@ dependencies:
  - tornado=6.4=py310hd125d64_0
  - traitlets=5.14.2=pyhd8ed1ab_0
  - types-python-dateutil=2.9.0.20240316=pyhd8ed1ab_0
- - typing-extensions=4.10.0=hd8ed1ab_0
- - typing_extensions=4.10.0=pyha770c72_0
+ - typing-extensions=4.11.0=hd8ed1ab_0
+ - typing_extensions=4.11.0=pyha770c72_0
  - typing_utils=0.1.0=pyhd8ed1ab_0
  - tzdata=2024a=h0c530f3_0
  - uc-micro-py=1.0.3=pyhd8ed1ab_0
@@ -223,8 +230,8 @@ dependencies:
  - webcolors=1.13=pyhd8ed1ab_0
  - webencodings=0.5.1=pyhd8ed1ab_2
  - websocket-client=1.7.0=pyhd8ed1ab_0
- - wget=1.20.3=h470526e_1
- - wheel=0.42.0=pyhd8ed1ab_0
+ - wget=1.21.4=he2df1f1_0
+ - wheel=0.43.0=pyhd8ed1ab_1
  - widgetsnbextension=4.0.10=pyhd8ed1ab_0
  - xz=5.2.6=h57fd34a_0
  - yaml=0.2.5=h3422bc3_2

diff --git a/extras/environment.yml b/extras/environment.yml
@@ -48,4 +48,4 @@ dependencies:
  - pytest
 
  # this needs to stay in sync with docs/environment.yml
- - jupyter-book=0.15.1
+ - jupyter-book=1.0.0
diff --git a/lecture_0.ipynb b/lecture_0.ipynb
@@ -745,10 +745,10 @@
  "execution_count": 1,
  "metadata": {
  "execution": {
- "iopub.execute_input": "2024-03-18T21:42:59.546099Z",
- "iopub.status.busy": "2024-03-18T21:42:59.545959Z",
- "iopub.status.idle": "2024-03-18T21:42:59.552656Z",
- "shell.execute_reply": "2024-03-18T21:42:59.552293Z"
+ "iopub.execute_input": "2024-04-08T04:16:02.493013Z",
+ "iopub.status.busy": "2024-04-08T04:16:02.492553Z",
+ "iopub.status.idle": "2024-04-08T04:16:02.504217Z",
+ "shell.execute_reply": "2024-04-08T04:16:02.503859Z"
  },
  "tags": [
  "columbia-only"
@@ -770,7 +770,7 @@
  " "
  ],
  "text/plain": [
- "<IPython.lib.display.IFrame at 0x111e41990>"
+ "<IPython.lib.display.IFrame at 0x1121c3460>"
  ]
  },
  "execution_count": 1,