Code

Load vcf bgz#238

Code

Merged

bhosking merged 7 commits intomasteraehrc/VariantSpark:masterfrom load_vcf_bgzaehrc/VariantSpark:load_vcf_bgzCopy head branch name to clipboardApr 15, 2024

+50-3

Commits

Commits on Apr 4, 2024

• use htsjdk.samtools.util.BlockCompressedInputStream to load .vcf.bgz

  

  Xu, Qinying (H&B, Herston)

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  Xu, Qinying (H&B, Herston)

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  3289cd2

• add method to check bgzip

  

  Xu, Qinying (H&B, Herston)

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  Xu, Qinying (H&B, Herston)

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  6741f68

• add testing note to code

  

  Xu, Qinying (H&B, Herston)

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  Xu, Qinying (H&B, Herston)

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  e58d7f8

• add code passed build

  

  Xu, Qinying (H&B, Herston)

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  Xu, Qinying (H&B, Herston)

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  7b6df96

• code works

  

  Xu, Qinying (H&B, Herston)

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  Xu, Qinying (H&B, Herston)

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  da88fa9

• remove mark

  

  Xu, Qinying (H&B, Herston)

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  Xu, Qinying (H&B, Herston)

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  3ed3b78

Commits on Apr 5, 2024

• add comments as reviewer suggested

  

  Xu, Qinying (H&B, Herston)

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  Xu, Qinying (H&B, Herston)

  committed
  47dda8f