Adapt data handling #8
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| # GitHub Actions workflow for testing and continuous integration. | |
| # | |
| # This file performs testing using tox and tox.ini to define and configure the test environments. | |
| name: CI tests | |
| on: | |
| push: | |
| branches: | |
| - main # GitHub now defaults to 'main' as the name of the primary branch. Change this as needed. | |
| # tags: # run CI if specific tags are pushed | |
| pull_request: | |
| # branches: # only build on PRs against 'main' if you need to further limit when CI is run. | |
| # - main | |
| jobs: | |
| # Github Actions supports ubuntu, windows, and macos virtual environments: | |
| # https://help.github.com/en/actions/reference/virtual-environments-for-github-hosted-runners | |
| ci_tests: | |
| name: CI tests | |
| runs-on: ubuntu-latest | |
| env: | |
| CACHE_NUMBER: 0 | |
| GAMMAPY_DATA: data | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| - name: Setup mambaforge | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| miniforge-variant: Mambaforge | |
| miniforge-version: latest | |
| activate-environment: snakemake-workflow-fermi-lat | |
| use-mamba: true | |
| - name: Cache conda environment | |
| uses: actions/cache@v2 | |
| with: | |
| path: ${{ env.CONDA }}/envs | |
| key: | |
| conda-${{ runner.os }}--${{ runner.arch }}--${{hashFiles('environment.yaml') }}-${{ env.CACHE_NUMBER }} | |
| id: cache | |
| - name: Update environment | |
| run: | |
| mamba env update -f environment.yaml | |
| if: steps.cache.outputs.cache-hit != 'true' | |
| - name: Download test files | |
| run: | | |
| cd data | |
| wget https://github.com/adonath/snakemake-workflow-fermi-lat-test-data/archive/refs/heads/main.zip | |
| unzip main.zip | |
| mv snakemake-workflow-fermi-lat-test-data-main/* . | |
| rm -rf snakemake-workflow-fermi-lat-test-data-main main.zip | |
| - name: Run tests | |
| shell: bash -l {0} | |
| run: | | |
| snakemake -c2 |