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Flexible dimension ordering #495

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Flexible dimension ordering

Flexible dimension ordering #495

Workflow file for this run

.github/workflows/test_pr.yml at 0e448e3
name: Tests
on:
push:
branches:
- main
pull_request_target:
branches:
- main
jobs:
platforms:
name: Python ${{ matrix.python }} on ${{ matrix.platform }}
runs-on: ${{ matrix.platform }}
timeout-minutes: 20
strategy:
fail-fast: false
matrix:
platform:
- windows-latest
- ubuntu-latest
- macos-latest
python:
- "3.8"
- "3.9"
- "3.10"
- "3.11"
- "3.12"
permissions:
actions: write
env:
GH_TOKEN: ${{ github.token }}
steps:
- name: Cancel Previous Runs
uses: styfle/[email protected]
with:
access_token: ${{ github.token }}
- uses: actions/checkout@v3
with:
submodules: true
ref: ${{ github.event.pull_request.head.sha }}
- name: Set up Python ${{ matrix.python }}
uses: actions/setup-python@v4
with:
python-version: ${{ matrix.python }}
- name: Install
run: |
pip install --upgrade pip
pip install -e '.[testing]'
- name: Test
env:
ZARR_V3_EXPERIMENTAL_API: "1"
ZARR_V3_SHARDING: "1"
run: |
python -m pytest -k test_basic
python -m pytest -k test_zarr
dcam:
name: Python ${{ matrix.python }} (DCAM)
runs-on:
- self-hosted
- dcam
- CP15440-20UP
timeout-minutes: 20
strategy:
fail-fast: false
matrix:
python:
- "3.8"
- "3.9"
- "3.10"
- "3.11"
- "3.12"
permissions:
actions: write
env:
GH_TOKEN: ${{ github.token }}
steps:
- name: Cancel Previous Runs
uses: styfle/[email protected]
with:
access_token: ${{ github.token }}
- uses: actions/checkout@v3
with:
submodules: true
ref: ${{ github.event.pull_request.head.sha }}
- name: Get CMake 3.24
uses: lukka/get-cmake@latest
with:
cmakeVersion: 3.24.3
- name: Set up Python ${{ matrix.python }}
uses: actions/setup-python@v4
with:
python-version: ${{ matrix.python }}
- name: Install
run: |
pip install --upgrade pip
pip install -e .[testing]
- name: Test
run: |
python -m pytest -k test_dcam
# TODO (aliddell): uncomment when we get an eGrabber runner up again
# egrabber:
# name: Python ${{ matrix.python }} (eGrabber)
# runs-on:
# - self-hosted
# - egrabber
# - VC-151MX-M6H00
# timeout-minutes: 20
# strategy:
# fail-fast: false
# matrix:
# python:
# - "3.8"
# - "3.9"
# - "3.10"
# - "3.11"
# - "3.12"
# permissions:
# actions: write
# env:
# GH_TOKEN: ${{ github.token }}
# steps:
# - name: Cancel Previous Runs
# uses: styfle/[email protected]
# with:
# access_token: ${{ github.token }}
# - uses: actions/checkout@v3
# with:
# submodules: true
# ref: ${{ github.event.pull_request.head.sha }}
# - name: Get CMake 3.24
# uses: lukka/get-cmake@latest
# with:
# cmakeVersion: 3.24.3
# - name: Set up Python ${{ matrix.python }}
# uses: actions/setup-python@v4
# with:
# python-version: ${{ matrix.python }}
# - name: Install
# run: |
# pip install --upgrade pip
# pip install -e .[testing]
# - name: Test
# run: |
# python -m pytest -k test_egrabber
spinnaker:
name: Python ${{ matrix.python }} (Spinnaker)
runs-on:
- self-hosted
- spinnaker
- BFLY-U3-23S6M-C
- ORX-10GS-51S5M-C
timeout-minutes: 20
strategy:
fail-fast: false
matrix:
python:
- "3.8"
- "3.9"
- "3.10"
- "3.11"
- "3.12"
permissions:
actions: write
env:
GH_TOKEN: ${{ github.token }}
steps:
- name: Cancel Previous Runs
uses: styfle/[email protected]
with:
access_token: ${{ github.token }}
- uses: actions/checkout@v3
with:
submodules: true
ref: ${{ github.event.pull_request.head.sha }}
- name: Get CMake 3.24
uses: lukka/get-cmake@latest
with:
cmakeVersion: 3.24.3
- name: Set up Python ${{ matrix.python }}
uses: actions/setup-python@v4
with:
python-version: ${{ matrix.python }}
- name: Install
run: |
pip install --upgrade pip
pip install -e .[testing]
- name: Test
run: |
python -m pytest -k test_spinnaker
pvcam:
name: Python ${{ matrix.python }} (PVCAM)
runs-on:
- self-hosted
- pvcam
- Prime-BSI
timeout-minutes: 20
strategy:
fail-fast: false
matrix:
python:
- "3.8"
- "3.9"
- "3.10"
- "3.11"
- "3.12"
permissions:
actions: write
env:
GH_TOKEN: ${{ github.token }}
steps:
- name: Cancel Previous Runs
uses: styfle/[email protected]
with:
access_token: ${{ github.token }}
- uses: actions/checkout@v3
with:
submodules: true
ref: ${{ github.event.pull_request.head.sha }}
- name: Get CMake 3.24
uses: lukka/get-cmake@latest
with:
cmakeVersion: 3.24.3
- name: Set up Python ${{ matrix.python }}
uses: actions/setup-python@v4
with:
python-version: ${{ matrix.python }}
- name: Install
run: |
pip install --upgrade pip
pip install -e .[testing]
- name: Test
run: |
python -m pytest -k test_pvcam
typing:
name: mypy typing
runs-on: windows-latest # FIXME (aliddell): stubtest claims to fail to find shared libs on Linux
env:
GH_TOKEN: ${{ github.token }}
steps:
- uses: actions/checkout@v3
with:
submodules: true
ref: ${{ github.event.pull_request.head.sha }}
- name: Set up Python 3.10
uses: actions/setup-python@v4
with:
python-version: "3.10"
- name: Install
run: |
pip install --upgrade pip
pip install -e '.[testing]'
- name: Run mypy on typed modules
run: mypy -p acquire
- name: Run stubtest on typed modules
run: stubtest acquire
merge:
name: Automerge
runs-on: "ubuntu-latest"
needs:
- platforms
- dcam
# - egrabber
- spinnaker
- pvcam
- typing
if: ${{ github.actor == 'dependabot[bot]' }}
steps:
- name: Checkout PR
uses: actions/checkout@v3
with:
ref: ${{ github.event.pull_request.head.sha }}
repository: ${{ github.event.pull_request.head.repo.full_name }}
- name: Approve PR
run: gh pr review --approve "$PR_URL"
env:
PR_URL: ${{ github.event.pull_request.html_url }}
GH_TOKEN: ${{ secrets.PAT }}
# Don't auto-merge major version updates
- name: Merge PR
if: ${{ steps.dependabot-metadata.outputs.update-type != 'version-update:semver-major' }}
run: gh pr merge --auto --squash "$PR_URL"
env:
PR_URL: ${{ github.event.pull_request.html_url }}
GH_TOKEN: ${{ secrets.PAT }}