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Antigenic Cartography

The Centre for Pathogen Evolution, Department of Zoology, University of Cambridge, UK

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  1. slurm-pipeline slurm-pipeline Public

    A Python class for scheduling SLURM jobs

    Python 57 12

  2. Racmacs Racmacs Public

    Racmacs R package for performing antigenic cartography

    JavaScript 20 9

  3. beast2-xml beast2-xml Public

    Python code to generate BEAST2 XML files

    Python 17 5

  4. dark-matter dark-matter Public

    Virus discovery

    Python 15 7

  5. figtree-recolor figtree-recolor Public

    A script to re-color a FigTree saved Nexus file

    Python 11 6

  6. ncbi-taxonomy-database ncbi-taxonomy-database Public

    How to make a mysql or sqlite database of NCBI taxonomy data for use with the dark-matter lineage fetcher

    Shell 7 2

Repositories

Showing 10 of 100 repositories
  • dark-matter Public

    Virus discovery

    acorg/dark-matter’s past year of commit activity
    Python 15 MIT 7 38 2 Updated Oct 8, 2024
  • seqdb-3 Public

    Set of tools to build and query sequence database v3

    acorg/seqdb-3’s past year of commit activity
    C++ 0 MIT 0 0 0 Updated Sep 22, 2024
  • acmacs-virus Public

    Modules to handle virus and influenza related stuff, e.g. virus names, passages, reassortant information

    acorg/acmacs-virus’s past year of commit activity
    C++ 0 MIT 0 0 0 Updated Sep 22, 2024
  • acmacs-map-draw Public

    Drawing antigenic maps

    acorg/acmacs-map-draw’s past year of commit activity
    C++ 0 MIT 0 0 0 Updated Sep 22, 2024
  • acmacs-draw Public

    Drawing on an image

    acorg/acmacs-draw’s past year of commit activity
    C++ 0 MIT 0 0 0 Updated Sep 22, 2024
  • acmacs-chart-2 Public

    Accessing chart data

    acorg/acmacs-chart-2’s past year of commit activity
    C++ 0 MIT 0 0 0 Updated Sep 22, 2024
  • acmacs-tal Public

    Tree et al.

    acorg/acmacs-tal’s past year of commit activity
    C++ 0 MIT 0 0 0 Updated Sep 22, 2024
  • acmacs-whocc Public

    Programs and scripts for WHO CCs chains

    acorg/acmacs-whocc’s past year of commit activity
    Python 0 MIT 1 0 0 Updated Sep 22, 2024
  • slurm-pipeline Public

    A Python class for scheduling SLURM jobs

    acorg/slurm-pipeline’s past year of commit activity
    Python 57 MIT 12 2 1 Updated Sep 20, 2024
  • beast2-xml Public

    Python code to generate BEAST2 XML files

    acorg/beast2-xml’s past year of commit activity
    Python 17 MIT 5 1 0 Updated Sep 3, 2024
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