Version, Changes and Manual updates

ablab · Jan 24, 2018 · 7aaee01 · 7aaee01
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diff --git a/CHANGES.txt b/CHANGES.txt
@@ -1,12 +1,20 @@
 -- Version history --
 
+4.6.2
+ 1. Fixed relatively rare bug of BSS when using large --min-alignment.
+
+ 2. Improved check of previously generated results before reusing them.
+
+ 3. GeneMark licence files are updated.
+
+
 4.6.1 
  1. Fixes in pip installation:
  - ignoring bdist_wheel and running regular installation instead;
  - no installation of aux files (LICENSE, Manual, etc);
  - proper error message about missing test_data dir (if "--test" is used).
 
- 2. Fixed conda installation (no GeneMark installation if there is no home dir)
+ 2. Fixed conda installation (no GeneMark installation if there is no home dir).
 
 
 4.6.0 

diff --git a/VERSION.txt b/VERSION.txt
@@ -1 +1 @@
-4.6.1
+4.6.2
diff --git a/manual.html b/manual.html
@@ -1,6 +1,6 @@
 <html>
 <head>
- <title>QUAST 4.6.1 manual</title>
+ <title>QUAST 4.6.2 manual</title>
  <style type="text/css">
  body {
  margin-top: 30px;
@@ -66,7 +66,7 @@
  </style>
 </head>
 <body>
-<h1>QUAST 4.6.1 manual</h1>
+<h1>QUAST 4.6.2 manual</h1>
 
 <p> QUAST stands for <u>QU</u>ality <u>AS</u>sessment <u>T</u>ool.
  The tool evaluates genome assemblies by computing various metrics. This document provides instructions
@@ -99,7 +99,7 @@ <h1>QUAST 4.6.1 manual</h1>
  for guidelines on how to complete the licensing process.
  <br>
  <br>
- Version 4.6.1 of QUAST was released under GPL v2 on 6 December 2017. Note that some of build-in third-party tools are not under GPL v2. See <a href="LICENSE.txt">LICENSE</a> for details.
+ Version 4.6.2 of QUAST was released under GPL v2 on 25 January 2018. Note that some of build-in third-party tools are not under GPL v2. See <a href="LICENSE.txt">LICENSE</a> for details.
 </p>
 
 <h2>Contents</h2>
@@ -169,11 +169,11 @@ <h2>1. Installation</h2>
  sudo apt-get install -y pkg-config libfreetype6-dev libpng-dev python-matplotlib
 </pre>
 <br>
-To download the <a href="https://downloads.sourceforge.net/project/quast/quast-4.6.1.tar.gz">QUAST source code tarball</a> and extract it, type:
+To download the <a href="https://downloads.sourceforge.net/project/quast/quast-4.6.2.tar.gz">QUAST source code tarball</a> and extract it, type:
 <pre class="code">
- wget https://downloads.sourceforge.net/project/quast/quast-4.6.1.tar.gz
- tar -xzf quast-4.6.1.tar.gz
- cd quast-4.6.1
+ wget https://downloads.sourceforge.net/project/quast/quast-4.6.2.tar.gz
+ tar -xzf quast-4.6.2.tar.gz
+ cd quast-4.6.2
 </pre>
 
 <br>