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BioAider V1.532-beta
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@ZhijianZhou01 ZhijianZhou01 released this 01 Feb 10:27
· 72 commits to master since this release
1.532
2fb8b5e
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Learn about vigilant mode.

Compared to BioAider V1.527

Add new functions

  • Add an extra output file in the Combination nt and aa (nt/aa) function of Sequence Identity Matrix, according to the user's proposed needs. The extra output data was used to draw heatmaps, below the diagonal is nucleotide identity and above diagonal is amino acid identity.

  • In the codon-based function, allow both base T and base U to exist in the input sequence-file, BioAider replaces all base U with base T before the calculation in these sections below,

    • The codon-alignment method based on MAFFT, Muscle and Clustal-Omega plugins.

    • the codon-based options in Mutation Analysis, Sequence Identity Matrix and Sequence Vary(nt → aa translation).

    • Tip: still, we want you to import consistent sequences correctly.

  • Change the import method of MAFFT, Muscle, Clustal-Omega and FastTree plugins, the new version using the Manage plugins menu instead of requiring external_program.zip.

Fix bugs

  • In the previous Ambiguous Base Edition, if there is not stop-codon at the end of the sequence, the last three bases will be deleted by mistake. This bug was fixed by the original contributors (Xiyue Wang).
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