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BioAider V1.334
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@ZhijianZhou01 ZhijianZhou01 released this 28 Mar 15:25
· 282 commits to master since this release
1.334
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Learn about vigilant mode.

  • Add the following functions:

    • Viral *.gb file parser: Extract the information from virus *.gb file, such as host, collection date and country, reference article, etc. What's more, BioAider can be extracted and stored according to species relationship.
    • Ambiguous Base Edition: Processing ambiguous bases and premature stop codons (preparing sequences for PAML analysis). This feature was contributed by Xiyue Wang. In addition, the authors suggest: (i) the content of ambiguous bases in a single sequence should not be greater than 2%; (ii) it is not suitable to correct the ambiguity base sites in those sequences with long genetic distances.
    • Delete Low-Similar Sequence: Removing sequences with similarity below the threshold.
    • Date converted to Decimal: Convert date to decimal.
    • Sequence Batch Download (NCBI): NCBI sequence batch search.
    • File Merge: Simple function of combining multiple files into one file.
    • Increased the output linked mutation sites and re-beautified the mapping in Mutation Analysis function.
    • Provide graphical interface for FastTree software, to facilitate parameter setting and usage. Thanks to the FastTree development team. The copy of FastTree software is in https://github.com/ZhijianZhou01/plugins. If you need it, please unzip external_program.zip and put the directory external_program in the root directory of the BioAider.

  • Fix bugs

    • Fixed the bug that the number of stop codons sometime cannot be counted in the summary file in Mutation Analysis function.

  • Please pay special attention:
    On April 24, 2021 (International Veterinary Day), we uploaded the BioAider distribution for MacOS system for the first time, and fixed some bugs in the last uploaded windows and linux version (but keep the version number 1.334 unchanged).

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