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  1. cov-lineages/pangolin cov-lineages/pangolin Public

    Software package for assigning SARS-CoV-2 genome sequences to global lineages.

    Python 430 106

  2. nextstrain/nextclade nextstrain/nextclade Public

    Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement

    Rust 220 61