v3.0.0 - Manuscript Submission - Full MitoCheck Data Processing

What's Changed

• Cp feature refactor by @roshankern in #32
• Preserve metadata by @roshankern in #33
• Remove unused cp features by @roshankern in #35
• Add figure data by @roshankern in #36
• Add no ic feature extraction by @roshankern in #37
• Add missed documentation by @roshankern in #38
• Add training data by @roshankern in #39
• Repo cleanup by @roshankern in #40

Full Changelog: v2.1.0...v3.0.0

IDR Stream Pipeline 2015 Trainingset

This version of mitocheck_data creates a training dataset of features and their corresponding phenotypic labels using the 2015 labeled data set (provided by Dr. Thomas Walter as part of MitoCheck).
Each module folder corresponds to a step in the pipeline, with the steps as follows:

Locate Data
IDR Streams
Format Training Data
Normalize Data
Analyze Data

IDR Stream Pipeline 06/21/2007 Trainingset

This version of mitocheck_data creates a training dataset of features and their corresponding phenotypic labels using the 06/21/2007 trainingset (provided by J.K. Heriche as part of MitoCheck).
Each module folder corresponds to a step in the pipeline, with the steps as follows:

0. Locate Data
1. IDR Streams
2. Format Training Data
3. Normalize Data
4. Analyze Data

Traditional Pipeline

This release of mitocheck_data is in traditional pipeline format. Each module folder corresponds to a step in the pipeline, with the steps as follows:

0. Download Data
1. Preprocess Data
2. Segment Nuclei
3. Extract Features
4. Preprocess Features